In recent years, there has been a revolution in the capability to measure and observe the processes of life on many temporal and spatial scales. Simultaneously, our ability to perform extensive simulations of molecular, cellular, and tissue-scale processes has substantially improved and will continue to do so. Research at ZIB is focused on extending this expertise towards spatiotemporal modeling and simulation across the molecular and cellular scales, from pushing time-scale and accuracy barriers, via a combination of the development of novel theoretical and algorithmic techniques for effective molecular or particle dynamics with machine learning, to spatio-temporal hybrid models coupling molecular with extra- and intra-cellular processes. Our projects target seamless integration of new mathematical approaches with incorporation of experimental data, high performance computing, and/or large-scale data analysis, and contribute to finding new strategies in relevant real-world applications like drug design or neurotransmission.

Spine_DYN3M

Individualized Morphological Analysis of the Human Spine

The causes of lower back pain (LBP) are still not fully understood. One essential part of a better understanding might be the association of LBP,  spinal morphology, and... Individualized Morphological Analysis of the Human Spine
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Reduced Basis Methods in Orthopedic Hip Surgery Planning

This project aims at the development, analysis and implementation of algorithms for computer-assisted planning in hip surgery and hip joint replacement by fast virtual... Reduced Basis Methods in Orthopedic Hip Surgery Planning
Temperature-based Estimation of Time of Death in Forensic Medicine

Temperature-based Estimation of Time of Death in Forensic Medicine

In forensic medicine, accurate determination of time of death remains a critical component in solving violent crimes. The prevailing technique relies on tracking the...

Temperature-based Estimation of Time of Death in Forensic Medicine
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Geometric Analysis of the Human Spine for image-based diagnosis, biomechanical analysis, and neurosurgery

Within Spine-Analysis project, articulated shape models of the human spine for surgeon planning are developed. In cooperation with the Medical Center of the Johannes... Geometric Analysis of the Human Spine for image-based diagnosis, biomechanical analysis, and neurosurgery
MODAL

Research Campus MODAL

The Forschungscampus ("Research Campus") MODAL is a platform for a public-private innovation partnership established by ZIB and Freie Universität Berlin together with... Research Campus MODAL
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Shape-Informed Medical Image Segmentation

The 3D geometry of anatomical structures facilitates computer-assisted diagnosis and therapy planning. Medical image data provides the basis for reconstructions of such...

Shape-Informed Medical Image Segmentation
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MODAL-MedLab

Changes in cells while they are undergoing transformation from "normal" to malignant cells (e.g. during infections) happen on many biological levels, such as genome... MODAL-MedLab