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Startseite Research Parallel And Distributed Computing Distributed Algorithms And Supercomputing

Distributed Algorithms and Supercomputing


Die Abteilung „Verteilte Algorithmen und Supercomputing“ des ZIB forscht zu Algorithmen für innovative Architekturen, angewandtes Hochleistungsrechnen, verteiltes Datenmanagement, Dynamik komplexer Materialien und effiziente, großskaliege Berechnungen in den Lebenswissenschaften.

Wir betreiben interdisziplinäre Forschung in den Bereichen Hardware- und Softwaretechnologien für Hochleistungsrechnen und wissenschaftliches Rechnen. Dazu gehören skalierbare, fehlertolerante Algorithmen, wissenschaftliches Workflow-Management, I/O-Monitoring und -Steuerung, moderne Netzwerke und Ausfallsicherheit in großen Systemen.

Gemeinsam mit Technologieanbietern, Fachwissenschaftlern und dem NHR-Center am ZIB nutzen wir moderne Hardwaretechnologien und Architekturen für die Lebenswissenschaften, Chemie, Materialwissenschaften und numerische Mathematik. Wir entwickeln Algorithmen für heterogene Systeme wie GPUs, FPGAs, Vektoreinheiten, Speicher mit hoher Bandbreite, persistente Speicher, NVMe und unterstützen Entwickler bei deren Integration.

 

Bereich
Parallel and Distributed Computing
Leitung
Schintke, Florian, Dr.
Steinke, Thomas, Dr.
Assistenz
Fehlhauer, Petra
Arbeitsgruppen
Algorithms for Innovative Architectures
Applied High-Performance Computing
Distributed Data Management
Dynamics of Complex Materials
Efficient Large Scale Computing in Life Sciences
Massively Parallel Data Analysis
Scalable Algorithms
Personal
Auevechanichkul, Nichanok
Braunger, Benedikt
Charron, Nicholas, Dr.
Christgau, Steffen, Dr.
Clausecker, Robert
Engel, Elias
Fackeldey, Konstantin, Priv. Doz. Dr.
Fehlhauer, Petra
Gecášek, Daniel, Dr.
Gorgulla, Christoph, Dr.
Graf von Schlieffen, Jannik
Greve, Nico
Holland-Moritz, Friedrich
Höfling, Felix, Prof. Dr.
Kaiser, Benjamin
Kansal, Jatin
Kharma, Sami
Klaus, Rainer
Kobschätzki, Joshua
Kramer, Tobias, Prof. Dr.
Krishnadas, Anirudh
Kussack, Renata
Läuter, Matthias, Dr.
Maghroori, Mahnoor
Mavroskoufis, Michael
Muamba Ngufulu, Stella
Poschwatta, Tobias
Ragyanszki, Anita, Dr.
Ramaki, Niaz Mohammad
Reinefeld, Alexander, Prof. Dr.
Rodrigues Pelá, Ronaldo, Dr.
Schimmel, Christian
Secker, Christopher, Dr.
Secker, Philipp, Dr.
Stein, Lewin, Dr.
Tuma, Christian, Dr.
Watermann, Tobias, Dr.
Witzke, Joel
Wollny, Stefan, Dr.
de Jonge, Niko

Publikationen

2026
The 2025 Roadmap to Ultrafast Dynamics: Frontiers of Theoretical and Computational Modelling J. Phys. Mater., 9(1), 2026 Fabio Caruso, Michael Sentef, Claudio Attaccalite, Michael Bonitz, Claudia Draxl, Umberto De Giovannini, Martin Eckstein, Ralph Ernstorfer, Michael Fechner, Myrta Grüning, Hannes Hübener, Jan-Philip Joost, Dominik Juraschek, Christoph Karrasch, Dante Marvin Kennes, Simone Latini, I-Te Lu, Ofer Neufeld, Enrico Perfetto, Laurenz Rettig, Ronaldo Rodrigues Pelá, Angel Rubio, Joseph Rudzinski, Michael Ruggenthaler, Davide Sangalli, Michael Schüler, Samuel Shallcross, Sangeeta Sharma, Gianluca Stefanucci, Philipp Werner BibTeX
arXiv
DOI
2025
BottleMod: Modeling Data Flows and Tasks for Fast Bottleneck Analysis Proceedings of the 16th ACM/SPEC International Conference on Performance Engineering (ICPE 2025), pp. 11-18, 2025 Ansgar Lößer, Joel Witzke, Florian Schintke, Björn Scheuermann PDF
BibTeX
DOI
URN
Dynamic control of X-ray core-exciton resonances by Coulomb screening in photoexcited semiconductors Communications Materials, Vol.6, p. 191, 2025 Thomas Rossi, Lu Qiao, Conner P. Dykstra, Ronaldo Rodrigues Pelá, Richard Gnewkow, Rachel F. Wallick, John H. Burke, Erin Nicholas, Anne-Marie March, Gilles Doumy, D. Bruce Buchholz, Christiane Deparis, Jesus Zuñiga-Pérez, Michael Weise, Klaus Ellmer, Mattis Fondell, Claudia Draxl, Renske van der Veen BibTeX
arXiv
DOI
Efficient and Accurate Machine Learning Interatomic Potential for Graphene: Capturing Stress–Strain and Vibrational Properties The Journal of Physical Chemistry C, Vol.129, pp. 16319-16326, 2025 Felipe Hawthorne, Paulo R. E. Raulino, Ronaldo Rodrigues Pelá, Cristiano F. Woellner BibTeX
arXiv
DOI
Fast Min-ϵ Segmented Regression using Constant-Time Segment Merging Proceedings of the 42nd International Conference on Machine Learning, pp. 40312-40327, Vol.267, PMLR, 2025 Ansgar Lößer, Max Schlecht, Florian Schintke, Joel Witzke, Matthias Weidlich, Björn Scheuermann PDF
BibTeX
Faster Positional‐Population Counts for AVX2, AVX‐512, and ASIMD Concurrency and Computation: Practice and Experience, 37(27-28), 2025 Robert Clausecker, Daniel Lemire, Florian Schintke PDF
BibTeX
DOI
Fluid flow inside slit-shaped nanopores: the role of surface morphology at the molecular scale The Journal of Chemical Physics, Vol.162, p. 104101, 2025 Giorgia Marcelli, Tecla Bottinelli Montandon, Roya Ebrahimi Viand, Felix Höfling BibTeX
arXiv
DOI
Geometric Features and a Neural Network Classifier for Detecting Melting-Like Transitions in Clusters. AIP Publications - The Journal of Chemical Physics, 2025 (revision under review) Anirudh Krishnadas, Maryam Moshi, Ramon Alain Miranda Quintana, Rene Fournier BibTeX
Hydrogen diffusion in garnet: insights from atomistic simulations Geochemistry Geophysics Geosystems, Vol.26, p. e2024GC011951, 2025 Xin Zhong, Felix Höfling, Timm John BibTeX
arXiv
DOI
Konzeption und Entwicklung einer Plattform zur geographisch verteilten Bereitstellung von latenzkritischen Anwendungen Master's thesis, Freie Universität Berlin, Florian Schintke, Katinka Wolter (Advisors), 2025 Henry el Bahnasawy BibTeX
Langevin equations and a geometric integration scheme for the overdamped limit of rotational Brownian motion of axisymmetric particles Physical Review Research, Vol.7, p. 043034, 2025 Felix Höfling, Arthur Straube BibTeX
arXiv
DOI
Melting Transitions in Small Aluminum Clusters Simulated with Energies Approaching DFT Accuracy. ACS Publications- Journal of Chemical Theory and Computation, 2025 (revision under review) Anirudh Krishnadas, Nicolas Charron, Rene Fournier BibTeX
Navigating protein landscapes with a machine-learned transferable coarse-grained model Nature Chemistry, Vol.17, pp. 1284-1292, 2025 Nicholas Charron, Félix Musil, Andrea Guljas, Yaoyi Chen, Klara Bonneau, Aldo Pasos-Trejo, Venturin Jacopo, Gusew Daria, Iryna Zaporozhets, Andreas Krämer, Clark Templeton, Kelkar Atharva, Aleksander Durumeric, Simon Olsson, Adrià Pérez, Maciej Majewski, Brooke Husic, Ankit Patel, Gianni De Fabritiis, Frank Noé, Cecilia Clementi BibTeX
DOI
arXiv
Non-Reflecting Characteristic Boundary Conditions for Adjoint Time-Domain Acoustic Simulations Journal of Theoretical and Computational Acoustics, 2025 (under review) Arne Hölter, Mathias Lemke, Stefan Weinzierl, Lewin Stein BibTeX
On the Usability and Energy Efficiency of High-Level Synthesis for FPGA-based Network-Attached Accelerators 2025 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 886-895, 2025 Steffen Christgau, Everingham Dylan, Max Lübke, Marco De Lucia, Danny Puhan, Niklas Schelten, Bettina Schnor, Hannes Signer, Johannes Spazier, Benno Stabernack, Fritjof Steinert, Serhii Yahdzhyiev BibTeX
DOI
Performance of the prototype Silicon Tracking System of the CBM experiment tested with heavy-ion beams at SIS18 Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol.1082, p. 171059, 2025 A. Agarwal, Nico Greve, Alexander Reinefeld, Florian Schintke, et al. BibTeX
DOI
arXiv
Rotation dynamics and torque efficiency of cometary nuclei Astronomy & Astrophysics, Vol.699, p. A75, 2025 Matthias Läuter, Tobias Kramer BibTeX
DOI
arXiv
Thermal environment and erosion of comet 67P/Churyumov-Gerasimenko Astronomy and Astrophysics, Vol.694, p. A21, 2025 Olivier Groussin, L. Jorda, N. Attree, S.P.D. Birch, Johanna Bürger, Pedro Gutiérrez, Abhinav S. Jindal, H.U. Keller, Tobias Kramer, Riccardo Lasagni Manghi, Matthias Läuter, J. Markkanen, R. Marschall, C. Schuckart BibTeX
DOI
2024
A Machine Learning and Quantum Chemistry Approach for Identifying Prebiotic Molecules in the Interstellar Medium Physical Chemistry Chemical Physics, 2024 (under review) Hongchen Ji, Anita Ragyanszki, Rene Fournier BibTeX
A Microphysical Thermal Model for the Lunar Regolith: Investigating the Latitudinal Dependence of Regolith Properties Journal of Geophysical Research: Planets, 129(3), 2024 Johanna Bürger, Paul Hayne, Bastian Gundlach, Matthias Läuter, Tobias Kramer, Jürgen Blum BibTeX
DOI
Benchmarking the rotating jet model of cometary activity with the trajectory of comet 67P/Churyumov-Gerasimenko EPSC Abstracts, Vol.17, 2024 Tobias Kramer, Matthias Läuter BibTeX
DOI
Computational Study of the Reactions of CH2 with HCNO and HNCO Canadian Journal of Chemistry, 2024 (accepted for publication) Hongchen Ji, Ragyanszki Anita, Rene Fournier BibTeX
DOI
Critical assessment of G0W0 calculations for 2D materials: the example of monolayer MoS2 npj Comput. Mater., Vol.10, p. 77, 2024 (preprint available as ) Ronaldo Rodrigues Pela, Cecilia Vona, Sven Lubeck, Ben Alex, Ignacio Gonzalez Oliva, Claudia Draxl BibTeX
DOI
arXiv
Critical surface adsorption of confined binary liquids with locally conserved mass and composition Molecular Physics, 122(21-22), p. e2391998, 2024 Sutapa Roy, Felix Höfling BibTeX
DOI
Disorder induced band gap lowering in kesterite type Cu2ZnSnSe4 and Ag2ZnSnSe4: a first-principles and special quasirandom structures investigation Journal of Physics: Condensed Matter, 36(37), 2024 Daniel Fritsch, Susan Schorr BibTeX
DOI
Electronic and optical properties of core-shell InAlN nanorods: a comparative study via LDA, LDA-1/2, mBJ, HSE06, G0W0 and BSE methods Physical Chemistry Chemical Physics, Vol.26, pp. 7504-7514, 2024 (preprint available as ) Ronaldo Rodrigues Pela, Ching-Lien Hsiao, Lars Hultman, Jens Birch, Gueorgui Kostov Gueorguiev BibTeX
DOI
arXiv
Faster Positional-Population Counts for AVX2, AVX-512, and ASIMD CoRR, Vol.abs/2412.16370, pp. 1-23, 2024 Robert Clausecker, Daniel Lemire, Florian Schintke BibTeX
DOI
I/O of Scientific Workflows Monitored in Detail 20th IEEE International Conference on e-Science, e-Science 2024, Osaka, Japan, September 16-20, 2024, pp. 1-2, 2024 Joel Witzke, Ansgar Lößer, Vasilis Bountris, Florian Schintke, Björn Scheuermann BibTeX
DOI
Low-level I/O Monitoring for Scientific Workflows CoRR, Vol.abs/2408.00411, pp. 1-10, 2024 Joel Witzke, Ansgar Lößer, Vasilis Bountris, Florian Schintke, Björn Scheuermann BibTeX
DOI
arXiv
Multi-Input data ASsembly for joint Analysis (MIASA): A framework for the joint analysis of disjoint sets of variables PLOS ONE, 19(5), 2024 Nomenjanahary Alexia Raharinirina, Vikram Sunkara, Max von Kleist, Konstantin Fackeldey, Marcus Weber BibTeX
DOI
Optimizing Checkpoint/Restart and Input/Output for Large Scale Applications Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann, Jens-Peter Redlich (Advisors), 2024 Masoud Jami BibTeX
DOI
Recent Flesnet developments and work in progress CBM Progress Report 2023, p. 132, Volker Friese, Piotr Gasik, Ilya Selyuzhenkov (Eds.), GSI Helmholtzzentrum für Schwerionenforschung GmbH, 2024 Florian Schintke, Nico Greve, Jan de Cuveland BibTeX
DOI
Speeding up all-electron real-time TDDFT demonstrated by the exciting package Comput. Phys. Commun., Vol.304, p. 109292, 2024 (preprint available as ) Ronaldo Rodrigues Pelá, Claudia Draxl BibTeX
DOI
arXiv
Structure of liquid–vapor interfaces: perspectives from liquid state theory, large-scale simulations, and potential grazing-incidence X-ray diffraction The Journal of Chemical Physics, Vol.160, p. 104107, 2024 Felix Höfling, Siegfried Dietrich BibTeX
arXiv
DOI
The Results of ISSI Team #547: Understanding the Activity of Comets Through 67P's Dynamics EPSC Abstracts, Vol.17, 2024 Nicholas Attree, Pedro Gutiérrez, Olivier Groussin, Johanna Bürger, Horst Uwe Keller, Tobias Kramer, Riccardo Lasagni Manghi, Matthias Läuter, Pablo Lemos, Johannes Markkanen, Raphael Marschall, Christian Schuckart BibTeX
DOI
Understanding the Origins of Life - A Machine learning approach to estimate reaction mechanisms of biotic precursors Perspectives and challenges of future HPC installations for atomistic and molecular simulations, 2024 (in press) Anita Ragyanszki, Hongchen Ji, Rene Fournier BibTeX
Understanding the Origins of Life – A Machine learning approach to estimate reaction mechanisms of biotic precursors SIMPLAIX, 2024 Anita Ragyanszki, Hongchen Ji, Rene Fournier BibTeX
Validity constraints for data analysis workflows Future Generation Computer Systems, Vol.157, pp. 82-97, 2024 Florian Schintke, Khalid Belhajjame, Ninon De Mecquenem, David Frantz, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Paolo Missier, Rebecca Sattler, Jan Arne Sparka, Daniel T. Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser PDF
BibTeX
DOI
Varying water activity and momentum transfer on comet 67P/Churyumov-Gerasimenko from its non-gravitational forces and torques Astronomy and Astrophysics, Vol.690, p. A82, 2024 Nicholas Attree, Pedro Gutiérrez, Olivier Groussin, Johanna Bürger, Horst Uwe Keller, Tobias Kramer, RICCARDO LASAGNI MANGHI, Matthias Läuter, Pablo Lemos, Johannes Markkanen, Raphael Marschall, Christian Schuckart BibTeX
DOI
arXiv
2023
Accurate calculation of the interaction of a barium monofluoride molecule with an argon atom: A step towards using matrix isolation of BaF for determining the electron electric dipole moment Journal of Molecular Spectroscopy, Vol.391, p. 111736, 2023 Gregory K. Koyanagi, Ricardo Lewis Lambo, Anita Ragyanszki, Rene A. Fournier, Marko W. Horbatsch, Eric A. Hessels BibTeX
DOI
CAWL: A Cache-aware Write Performance Model of Linux Systems arXiv, pp. 1-22, 2023 Masoud Gholami, Florian Schintke BibTeX
DOI
arXiv
Calculation of the local environment of a barium monofluoride molecule in an argon matrix: a step towards using matrix-isolated BaF for determining the electron electric dipole moment Molecular Physics, 121(6), 2023 Ricardo Lewis Lambo, Gregory K. Koyanagi, Anita Ragyanszki, Marko Horbatsch, Rene Fournier, Eric A. Hessels BibTeX
DOI
Chemical space of the singlet C4H8O2 species. A systematic theoretical analysis on their structural and thermochemical properties Computational and Theoretical Chemistry, Vol.1225, p. 114162, 2023 Zsofia Borbala Rozsa, Anita Ragyanszki, Bela Viskolcz, Milan Szori BibTeX
DOI
Enabling Communication with FPGA-based Network-attached Accelerators for HPC Workloads Proceedings of the SC'23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, SC-W 2023, Denver, CO, USA, November 12-17, 2023, pp. 530-538, 2023 Steffen Christgau, Dylan Everingham, Florian Mikolajczak, Niklas Schelten, Bettina Schnor, Max Schroetter, Benno Stabernack, Fritjof Steinert BibTeX
DOI
Gaining Cross-Platform Parallelism for HAL’s Molecular Dynamics Package using SYCL 29. PARS-Workshop 2023, Vol.36, Mitteilungen - Gesellschaft für Informatik e.V., Parallel-Algorithmen und Rechnerstrukturen, 2023 (accepted for publication) Viktor Skoblin, Felix Höfling, Steffen Christgau BibTeX
arXiv
Investigating the Latitudinal Dependence of Lunar Regolith Properties Using LRO/Diviner Data and a Microphysical Thermal Model Bulletin of the AAS, 55(8), 2023 Johanna Bürger, Paul Hayne, Bastian Gundlach, Matthias Läuter, Tobias Kramer, Jürgen Blum BibTeX
Machine learned coarse-grained protein force-fields: Are we there yet? Current Opinion in Structural Biology, Vol.79, 2023 Aleksander Durumeric, Nicholas Charron, Clark Templeton, Félix Musil, Klara Bonneau, Aldo Pasos-Trejo, Yaoyi Chen, Atharva Kelkar, Frank Noé, Cecilia Clementi BibTeX
DOI
Machine learning coarse-grained potentials of protein thermodynamics Nature Communications, Vol.14, 2023 Maciej Majewski, Adrià Pérez, Philipp Thölke, Stefan Doerr, Nicholas Charron, Toni Giorgino, Brooke Husic, Cecilia Clementi, Frank Noé, Gianni De Fabritiis BibTeX
DOI
Machine learning estimation of reaction energy barriers Computational and Theoretical Chemistry, Vol.1229, p. 114332, 2023 Hongchen Ji, Anita Ragyanszki, Rene A. Fournier BibTeX
DOI
Non-gravitational acceleration and torque on comet 67P/Churyumov-Gerasimenko Bulletin of the AAS, 55(8), 2023 Matthias Läuter, Tobias Kramer BibTeX
Prioritised Unit Propagation by Partitioning the Watch Lists Proceedings of the 14th International Workshop on Pragmatics of SAT co-located with the 26th International Conference on Theory and Applications of Satisfiability Testing (SAT 2023), pp. 14-34, Vol.3545, 2023 Benjamin Kaiser, Robert Clausecker, Michael Mavroskoufis BibTeX
Proactive Resource Management to Optimize Distributed Workflow Executions IEEE International Conference on Big Data, BigData 2023, Sorrento, Italy, December 15-18, 2023, pp. 6305-6307, 2023 Joel Witzke, Florian Schintke, Ansgar Lößer, Björn Scheuermann BibTeX
DOI
Statistically optimal force aggregation for coarse-graining molecular dynamics The Journal of Physical Chemistry Letters, 14(17), pp. 3970-3979, 2023 Andreas Krämer, Aleksander Durumeric, Nicholas Charron, Yaoyi Chen, Cecilia Clementi, Frank Noé BibTeX
DOI
Strained Small Nitrogen Heterocycles-Azabicyclobutanes and Azirines ChemistrySelect, 8(26), 2023 Anita Ragyanszki, Bela Fiser, Edward Lee-Ruff, Joel F. Liebman BibTeX
DOI
The kinetics of uncatalyzed and catalyzed urethane forming reactions of aliphatic diisocyanates with butan-1-ol New J. Chem., Vol.47, pp. 16096-16107, 2023 Anett Juhasz, Uneri Haymana Serra, Csilla Lakatos, Bence Vadkerti, Anita Ragyanszki, Odon Farkas, Sandor Keki, Lajos Nagy BibTeX
DOI
Time-domain observation of interlayer exciton formation and thermalization in a MoSe2/WSe2 heterostructure Nature Communications, Vol.14, pp. 1-9, 2023 Veronica R. Policht, Henry Mittenzwey, Oleg Dogadov, Manuel Katzer, Andrea Villa, Qiuyang Li, Benjamin Kaiser, Aaron M. Ross, Francesco Scotognella, Xiaoyang Zhu, Andreas Knorr, Malte Selig, Giulio Cerullo, Stefano Dal Conte BibTeX
DOI
Transcoding unicode characters with AVX-512 instructions Software: Practice and Experience, 53(12), pp. 2430-2462, 2023 Robert Clausecker, Daniel Lemire BibTeX
DOI
Validity Constraints for Data Analysis Workflows arXiv, pp. 1-28, 2023 Florian Schintke, Ninon De Mecquenem, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Rebecca Sattler, Jan Arne Sparka, Daniel Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser BibTeX
DOI
arXiv
2022
A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, H2RC@SC 2022, Dallas, TX, USA, November 13-18, 2022, pp. 9-17, 2022 Steffen Christgau, Marius Knaust, Thomas Steinke BibTeX
DOI
Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles ZIB-Report 22-21 Arthur Straube, Stefanie Winkelmann, Felix Höfling PDF
BibTeX
DOI
URN
An Early Scalability Study of Omni-Path Express ISC High Performance, 2022 Glenn Brook, Douglas Fuller, John Swinburne, Steffen Christgau, Matthias Läuter, Ronaldo Rodrigues Pelá, Stein Lewin, Tuma Christian, Thomas Steinke BibTeX
DOI
BottleMod: Modeling Data Flows and Tasks for Fast Bottleneck Analysis arXiv, pp. 1-20, 2022 Angar Lößer, Joel Witzke, Florian Schintke, Björn Scheuermann BibTeX
DOI
arXiv
BottleMod: Modeling Data Flows and Tasks for Fast Bottleneck Analysis 2022 IEEE International Conference on Big Data, Posters, 2022 Angar Lößer, Joel Witzke, Florian Schintke, Björn Scheuermann BibTeX
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, pp. 180-189, 2022 Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke BibTeX
DOI
Determination of the ice composition near the surface of comet 67P/Churyumov-Gerasimenko Europlanet Science Congress, p. EPSC2022-826, 2022 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
DOI
Ehrenfest dynamics implemented in the all-electron package exciting Electron. Struct., Vol.4, p. 037001, 2022 Ronaldo Rodrigues Pelá, Claudia Draxl BibTeX
DOI
IOSIG: Declarative I/O-Stream Properties Using Pragmas Datenbank-Spektrum, 22(2), pp. 109-119, 2022 Masoud Gholami, Florian Schintke PDF
BibTeX
DOI
Large-Scale Performance of the Data-Flow Scheduler (DFS) and FLESnet CBM Progress Report 2021, pp. 170-171, 2022 Farouk Salem, Florian Schintke BibTeX
DOI
Lunar regolith properties derived from LRO/Diviner data and thermophysical modelling Europlanet Science Congress, p. EPSC2022-92, 2022 Johanna Bürger, Bastian Gundlach, Jürgen Blum, Paul Hayne, Matthias Läuter, Tobias Kramer BibTeX
DOI
Parallelization of large-scale agent-based epidemiological simulations Proceedings of the 34th European Modeling & Simulation Symposium, 2022 Steffen Fürst, Christian Rakow BibTeX
DOI
Spontaneous trail formation in populations of auto-chemotactic walkers New Journal of Physics, Vol.24, p. 013012, 2022 (preprint available as ZIB-Report 21-36) Zahra Mokhtari, Robert I. A. Patterson, Felix Höfling PDF (ZIB-Report)
BibTeX
DOI
The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids Concurrency and Computation: Practice and Experience, 34(14), 2022 Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, F.J. Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, J. Teich, Martin Weiser, Florian Wende BibTeX
DOI
The ice composition close to the surface of comet 67P/Churyumov-Gerasimenko ACS Earth and Space Chemistry, 6(5), pp. 1189-1203, 2022 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
DOI
arXiv
The near nucleus gas and dust environment around comet 67P/Churyumov-Gerasimenko Europlanet Science Congress, p. EPSC2022-281, 2022 Tobias Kramer, Matthias Läuter BibTeX
DOI
Towards Advanced Monitoring for Scientific Workflows 2022 IEEE International Conference on Big Data, 11th Workshop on Scalable Cloud Data Management, 2022 Jonathan Bader, Joel Witzke, Soeren Becker, Ansgar Lößer, Fabian Lehmann, Leon Doehler, Anh Duc Vu, Odej Kao BibTeX
arXiv
2021
A Measure of Quality for IDA* Heuristics Proceedings of the Fourteenth International Symposium on Combinatorial Search (SoCS 2021), pp. 55-63, 2021 Robert Clausecker, Florian Schintke PDF
BibTeX
Adjungierten-basierte Synthese und Bestimmung optimaler Treiberfunktionen von Lautsprechern mit komplexer Richtcharakteristik Deutsche Gesellschaft für Akustik e.V., 2021, ISBN: 978-3-939296-18-8 Mathias Lemke, Lewin Stein, Arne Hölter, Stefan Weinzierl BibTeX
DOI
CleanMaple Proceedings of SAT Competition 2021 : Solver and Benchmark Descriptions, p. 24, 2021 Benjamin Kaiser, Robert Clausecker BibTeX
CleanMaple_PriPro, CaDiCaL_PriPro and CaDiCaL_PriPro_no_bin Proceedings of SAT Competition 2021 : Solver and Benchmark Descriptions, p. 25, 2021 Benjamin Kaiser, Robert Clausecker BibTeX
Combining XOR and Partner Checkpointing for Resilient Multilevel Checkpoint/Restart 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS), pp. 277-288, 2021 Masoud Gholami, Florian Schintke BibTeX
DOI
Continuous demixing transition of binary liquids: finite-size scaling from the analysis of sub-systems Advances Theory and Simulation, Vol.4, p. 2000235, 2021 Yogyata Pathania, Dipanjan Chakraborty, Felix Höfling BibTeX
DOI
DFI: The Data Flow Interface for High-Speed Networks SIGMOD '21: International Conference on Management of Data, pp. 1825-1837, 2021 Lasse Thostrup, Jan Skrzypczak, Matthias Jasny, Tobias Ziegler, Carsten Binnig BibTeX
DOI
Generalized master equation for first-passage problems in partitioned spaces Journal of Physics A: Mathematical and Theoretical, Vol.54, p. 215601, 2021 Daniela Frömberg, Felix Höfling BibTeX
DOI
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids Euro-Par 2020: Parallel Processing Workshops., pp. 185-196, 2021 Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende BibTeX
DOI
Load balancing mechanism for FLESnet CBM Progress Report 2020, pp. 156-157, 2021 Farouk Salem, Florian Schintke BibTeX
DOI
Matching the activity of comet 67P/Churyumov-Gerasimenko with long-term ground-based astrometry Europlanet Science Congress, p. EPSC2021-337, Vol.15, 2021 Tobias Kramer, Matthias Läuter BibTeX
DOI
Nonequilibrium induced by reservoirs: Physico-mathematical model and numerical tests Advances Theory and Simulation, Vol.4, p. 2100071, 2021 Rupert Klein, Roya Ebrahimi Viand, Felix Höfling, Luigi Delle Site BibTeX
DOI
Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs IWOCL'21: International Workshop on OpenCL, 2021 Tobias Baumann, Matthias Noack, Thomas Steinke BibTeX
DOI
Sliding Tile Puzzles Proceedings of SAT Competition 2021 : Solver and Benchmark Descriptions, p. 57, 2021 Robert Clausecker, Benjamin Kaiser BibTeX
Stochastic pH oscillations in a model of the urea–urease reaction confined to lipid vesicles J. Phys. Chem. Lett., Vol.12, pp. 9888-9893, 2021 Arthur Straube, Stefanie Winkelmann, Christof Schütte, Felix Höfling BibTeX
DOI
The Collaborative Research Center FONDA Datenbank-Spektrum, 21(3), pp. 255-260, 2021 Ulf Leser, Marcus Hilbrich, Claudia Draxl, Peter Eisert, Lars Grunske, Patrick Hostert, Dagmar Kainmüller, Odej Kao, Birte Kehr, Timo Kehrer, Christoph Koch, Volker Markl, Henning Meyerhenke, Tilmann Rabl, Alexander Reinefeld, Knut Reinert, Kerstin Ritter, Björn Scheuermann, Florian Schintke, Nicole Schweikardt, Matthias Weidlich BibTeX
DOI
Thermodynamic relations at the coupling boundary in adaptive resolution simulations for open systems Advances Theory and Simulation, Vol.4, p. 2000303, 2021 Abbas Gholami, Felix Höfling, Rupert Klein, Luigi Delle Site BibTeX
DOI
2020
Adjoint-Based Identification of Sound Sources for Sound Reinforcement and Source Localization Notes on Numerical Fluid Mechanics and Multidisciplinary Design, Springer, Cham, pp. 263-278, 2020, ISBN: 978-3-030-52429-6 Mathias Lemke, Lewin Stein BibTeX
DOI
Approximate Distributed Set Reconciliation with Defined Accuracy Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2020 Nico Kruber BibTeX
DOI
URN
CTSat: C++ Template Abstractions for Dynamic Interchangeable SAT Solver Features Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 32-33, 2020 Marc Hartung BibTeX
Collective directional locking of colloidal monolayers on a periodic substrate Phys. Rev. Lett., Vol.124, p. 058002, 2020 Ralph L. Stoop, Arthur Straube, Tom H. Johansen, Pietro Tierno BibTeX
DOI
Comparing MPI Passive Target Synchronization on a Non-Cache-Coherent Shared-Memory Processor Mitteilungen - Gesellschaft für Informatik e. V., Parallel-Algorithmen und Rechnerstrukturen, ISSN 0177-0454, 28. PARS-Workshop, pp. 121-132, 2020 Steffen Christgau, Bettina Schnor BibTeX
Crafted Benchmarks with Artificial Community Structure and Known Complexity Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 89-90, 2020 Marc Hartung, Benjamin Kaiser BibTeX
Directional sound source modeling using the adjoint Euler equations in a finite-difference time-domain approach Acoustical Society of America, 148(5), pp. 3075-3085, 2020 Lewin Stein, Florian Straube, Stefan Weinzierl, Mathias Lemke PDF
BibTeX
DOI
Effect of disorder and polarization sequences on two-dimensional spectra of light harvesting complexes Photosynthesis Research, Vol.144, pp. 147-154, 2020 Tobias Kramer, Mirta Rodríguez BibTeX
arXiv
DOI
Finite-size corrections for the static structure factor of a liquid slab with open boundaries The Journal of Chemical Physics, Vol.153, p. 054119, 2020 Felix Höfling, Siegfried Dietrich BibTeX
DOI
Gas production for 14 species on comet 67P/Churyumov-Gerasimenko from 2014-2016 Europlanet Science Congress, p. EPSC2020-319, Vol.14, 2020 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
DOI
Handling Compute-Node Failures in FLESnet CBM Progress Report 2019, pp. 167-168, 2020, ISBN: 978-3-9815227-8-5 Farouk Salem, Florian Schintke, Alexander Reinefeld BibTeX
DOI
Investigating the Rosetta/RTOF observations of comet 67P/Churyumov-Gerasimenko using a comet nucleus model: Influence of dust mantle and trapped CO Astronomy & Astrophysics, Vol.638, p. A106, 2020 Margaux Hoang, Philippe Garnier, Jeremie Lasue, Henri Rème, Maria Teresa Capria, Kathrin Altwegg, Matthias Läuter, Tobias Kramer, Martin Rubin BibTeX
DOI
Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS 2020 IEEE/ACM Workshop on Memory Centric High Performance Computing (MCHPC), pp. 17-24, 2020, ISBN: 978-0-7381-1067-7 Steffen Christgau, Thomas Steinke BibTeX
DOI
Non-gravitational force model vs observation: the trajectory and rotation-axis of comet 67P/Churyumov-Gerasimenko Europlanet Science Congress, p. EPSC2020-403, Vol.14, 2020 Tobias Kramer, Matthias Läuter BibTeX
DOI
PauSat Proceedings of SAT Competition 2020: Solver and Benchmark Descriptions, pp. 34-35, 2020 Benjamin Kaiser, Marc Hartung BibTeX
Porting a Legacy CUDA Stencil Code to oneAPI 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2020, New Orleans, LA, USA, May 18-22, 2020, pp. 359-367, 2020, ISBN: 978-1-7281-7445-7 Steffen Christgau, Thomas Steinke BibTeX
DOI
RMWPaxos: Fault-Tolerant In-Place Consensus Sequences IEEE Transactions on Parallel and Distributed Systems, 31(10), pp. 2392-2405, 2020 Jan Skrzypczak, Florian Schintke, Thorsten Schütt BibTeX
DOI
arXiv
Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures Commun. Phys., Vol.3, p. 126, 2020 Arthur Straube, Bartosz G. Kowalik, Roland R. Netz, Felix Höfling BibTeX
DOI
Scheduling data streams for low latency and high throughput on a Cray XC40 using Libfabric Concurrency and Computation Practice and Experience, 32(20), pp. 1-14, 2020 Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld PDF
BibTeX
DOI
Synthese komplexer Richtcharakteristiken für eine Schallfeldoptimierung im Zeitbereich Jürgen Peissig (Ed.), Deutsche Gesellschaft für Akustik e.V., 2020, ISBN: 978-3939296171 Mathias Lemke, Lewin Stein, Arne Hölter, Florian Straube, Stefan Weinzierl BibTeX
DOI
The Quality of Heuristic Functions for IDA* ZIB-Report 20-17 Robert Clausecker PDF
BibTeX
URN
The gas production of 14 species from comet 67P/Churyumov-Gerasimenko based on DFMS/COPS data from 2014-2016 Monthly Notices of the Royal Astronomical Society, 498(3), pp. 3995-4004, 2020 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
arXiv
DOI
Theory and simulation of open systems out of equilibrium The Journal of Chemical Physics, Vol.153, p. 101102, 2020 Roya Ebrahimi Viand, Felix Höfling, Rupert Klein, Luigi Delle Site BibTeX
DOI
Towards Log-Less, Fine-Granular State Machine Replication Datenbank Spektrum, 20(3), pp. 231-241, 2020 Jan Skrzypczak, Florian Schintke BibTeX
DOI
Transactions on Red-black and AVL trees in NVRAM arXiv, 2020 Thorsten Schütt, Florian Schintke, Jan Skrzypczak BibTeX
arXiv
Transient capture of electrons in magnetic fields, or: comets in the restricted three-body problem Journal of Physics: Conference Series, p. 012019, Vol.1612, 2020 Tobias Kramer BibTeX
arXiv
DOI
Using Blockchain for Tamper-Proof Broadcast Protocols Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2020 Jonas Spenger PDF
BibTeX
URN
2019
Advancing the Heterogeneous Active Messages Approach Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2019 Daniel Deppisch BibTeX
Branched Flow 2019 (under review) Eric J. Heller, Ragnar Fleischmann, Tobias Kramer BibTeX
arXiv
C++ Data Layout Abstractions through Proxy Types 2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 14th International Workshop on Automatic Performance Tunings (iWAPT), pp. 758-767, 2019 Florian Wende BibTeX
DOI
Collective dynamics and conformal ordering in electrophoretically driven nematic colloids Phys. Rev. Research, Vol.1, p. 022008, 2019 Arthur Straube, Josep M. Pagès, Pietro Tierno, Jordi Ignés-Mullol, Francesc Sagués BibTeX
DOI
Comet 67P/Churyumov-Gerasimenko rotation changes derived from sublimation induced torques Astronomy & Astrophysics, Vol.630, p. A3, 2019 Tobias Kramer, Matthias Läuter, Stubbe Hviid, Laurent Jorda, Horst Uwe Keller, Ekkehard Kührt BibTeX
arXiv
DOI
DPI: The Data Processing Interface for Modern Networks 9th Biennial Conference on Innovative Data Systems Research, 2019 Gustavo Alonso, Carsten Binnig, Ippokratis Pandis, Kenneth Salem, Jan Skrzypczak, Ryan Stutsman, Lasse Thostrup, Tianzheng Wang, Zeke Wang, Tobias Ziegler PDF
BibTeX
Diffusion-influenced reaction rates in the presence of pair interactions The Journal of Chemical Physics, Vol.151, p. 164105, 2019 Manuel Dibak, Christoph Fröhner, Frank Noé, Felix Höfling BibTeX
DOI
arXiv
Ein System zur deterministischen Wiedergabe von verteilten Algorithmen auf Anwendungsebene Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2019 Dirk Mattes BibTeX
FFMK: A Fast and Fault-Tolerant Microkernel-Based System for Exascale Computing Software for Exascale Computing - SPPEXA 2016-2019, pp. 483-516, 2019 Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hannes Weisbach, Matthias Hille, Hermann Härtig, Alexander Margolin, Dror Sharf, Ely Levy, Pavel Gak, Amnon Barak, Masoud Gholami, Florian Schintke, Thorsten Schütt, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel BibTeX
DOI
Heterogeneous Active Messages (HAM) — Implementing Lightweight Remote Procedure Calls in C++ Proceedings of the 5th International Workshop on OpenCL, The Distributed & Heterogeneous Programming in C/C++ (DHPCC++ 2019) Conference, 2019 Matthias Noack BibTeX
DOI
Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA 2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Heterogeneity in Computing Workshop (HCW 2019), 2019 Matthias Noack, Erich Focht, Thomas Steinke BibTeX
Impact of mixed precision and storage layout on additive Schwarz smoothers ZIB-Report 18-62 (accepted for Numerical Linear Algebra with Applications) Jakob Schneck, Martin Weiser, Florian Wende PDF
BibTeX
URN
Improving the throughput of a scalable FLESnet using the Data-Flow Scheduler CBM Progress Report 2018, pp. 149-150, 2019, ISBN: 978-3-9815227-6-1 Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld BibTeX
DOI
Learned Clause Minimization in Parallel SAT Solvers Pragmatics of SAT 2019, pp. 1-11, 2019 Marc Hartung, Florian Schintke BibTeX
arXiv
Linearizable State Machine Replication of State-Based CRDTs without Logs Proceedings of the 2019 ACM Symposium on Principles of Distributed Computing, PODC 2019, pp. 455-457, 2019 Jan Skrzypczak, Florian Schintke, Thorsten Schütt BibTeX
DOI
Linearizable State Machine Replication of State-Based CRDTs without Logs arXiv, 2019 Jan Skrzypczak, Florian Schintke, Thorsten Schütt BibTeX
arXiv
MPI Passive Target Synchronization on a Non-Cache-Coherent Shared-Memory Processor ZIB-Report 19-52 Steffen Christgau, Bettina Schnor PDF
BibTeX
URN
DOI
Machine Learning of Two-Dimensional Spectroscopic Data Chemical Physics, Vol.520, pp. 52-60, 2019 Mirta Rodríguez, Tobias Kramer BibTeX
DOI
arXiv
Molecular Dynamics of Open Systems: Construction of a Mean‐Field Particle Reservoir Advanced Theory and Simulations, Vol.2, p. 1900014, 2019 Luigi Delle Site, Christian Krekeler, John Whittaker, Animesh Agarwal, Rupert Klein, Felix Höfling BibTeX
DOI
arXiv
Multilevel Checkpoint/Restart for Large Computational Jobs on Distributed Computing Resources 2019 IEEE 38th Symposium on Reliable Distributed Systems (SRDS), pp. 143-152, 2019 Masoud Gholami, Florian Schintke BibTeX
DOI
OpenMP on FPGAs—A Survey OpenMP: Conquering the Full Hardware Spectrum, pp. 94-108, 2019 Florian Mayer, Marius Knaust, Michael Philippsen BibTeX
DOI
OpenMP to FPGA Offloading Prototype Using OpenCL SDK 2019 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 387-390, 2019 Marius Knaust, Florian Mayer, Thomas Steinke BibTeX
DOI
Outgassing induced acceleration of comet 67P/Churyumov-Gerasimenko Astronomy & Astrophysics, Vol.630, p. A4, 2019 Tobias Kramer, Matthias Läuter BibTeX
arXiv
DOI
Pinpoint Data Races via Testing and Classification 2019 IEEE International Symposium on Software Reliability Engineering Workshops (ISSREW); 3rd International Workshop on Software Faults (IWSF 2019), pp. 386-393, 2019 Marc Hartung, Florian Schintke, Thorsten Schütt BibTeX
DOI
Scheduling Data Streams for Low Latency and High Throughput on a Cray XC40 Using Libfabric CUG Conference Proceedings, 2019 Farouk Salem, Thorsten Schütt, Florian Schintke, Alexander Reinefeld PDF
BibTeX
Surface localization of gas sources on comet 67P/Churyumov-Gerasimenko based on DFMS/COPS data Monthly Notices of the Royal Astronomical Society, Vol.483, pp. 852-861, 2019 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
DOI
arXiv
Transport of a colloidal particle driven across a temporally oscillating optical potential energy landscape New J. Phys., Vol.21, p. 083027, 2019 Joshua L. Abbott, Arthur Straube, Dirk G. A. L. Aarts, Roel P. A. Dullens BibTeX
DOI
ZIB_Glucose: Luby Blocked Restarts and Dynamic Vivification Proceedings of SAT Race 2019 : Solver and Benchmark Descriptions, pp. 43-44, 2019 Marc Hartung PDF
BibTeX
Zero-Aware Pattern Databases with 1-Bit Compression for Sliding Tile Puzzles Proceedings of the Twelfth International Symposium on Combinatorial Search (SoCS 2019), pp. 35-43, 2019 Robert Clausecker, Alexander Reinefeld BibTeX
2018
Atomarer Datenzugriff auf verteilten persistenten Arbeitsspeicher Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2018 Lennart Steininger BibTeX
Checkpoint Scheduling for Shared Usage of Burst-Buffers in Supercomputers Proceedings of the 47th International Conference on Parallel Processing Companion; SRMPDS 2018: The 14th International Workshop on Scheduling and Resource Management for Parallel and Distributed Systems, pp. 44:1-44:10, 2018 Masoud Gholami, Florian Schintke, Thorsten Schütt BibTeX
DOI
Chunked Bounding Volume Hierarchies for Fast Digital Prototyping using Volumetric Meshes IEEE Transactions on Visualization and Computer Graphics, 24(12), pp. 3044-3057, 2018 Robert Schmidtke, Kenny Erleben BibTeX
DOI
DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018), pp. 947-956, 2018, ISBN: 978-1-5386-5555-9 Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke BibTeX
DOI
Data-flow scheduling for a scalable FLESnet CBM Progress Report 2017, pp. 130-131, 2018, ISBN: 978-3-9815227-5-4 Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld BibTeX
DOI
Dust and gas emission from cometary nuclei: the case of comet 67P/Churyumov-Gerasimenko Advances in Physics: X, 3(1), p. 1404436, 2018 (preprint available as ZIB-Report 17-78) Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller PDF (ZIB-Report)
BibTeX
DOI
Efficient calculation of open quantum system dynamics and time-resolved spectroscopy with Distributed Memory HEOM (DM-HEOM) Journal of Computational Chemistry, 39(22), pp. 1779-1794, 2018 Tobias Kramer, Matthias Noack, Alexander Reinefeld, Mirta Rodríguez, Yaroslav Zelinskyi BibTeX
arXiv
DOI
Energy flow in the Photosystem I supercomplex: comparison of approximative theories with DM-HEOM Chemical Physics, Vol.515, pp. 262-271, 2018 Tobias Kramer, Matthias Noack, Jeffrey R. Reimers, Alexander Reinefeld, Mirta Rodríguez, Shiwei Yin BibTeX
arXiv
DOI
From Application to Disk: Tracing I/O Through the Big Data Stack High Performance Computing ISC High Performance 2018 International Workshops, Frankfurt/Main, Germany, June 24 - 28, 2018, Revised Selected Papers, Workshop on Performance and Scalability of Storage Systems (WOPSSS), pp. 89-102, 2018 Robert Schmidtke, Florian Schintke, Thorsten Schütt BibTeX
DOI
Gas production of comet 67P/Churyumov-Gerasimenko reconstructed from DFMS/COPS data Europlanet Science Congress, p. EPSC2018-515-1, Vol.12, 2018 Matthias Läuter, Tobias Kramer, Martin Rubin, Kathrin Altwegg BibTeX
Improving I/O Performance Through Colocating Interrelated Input Data and Near-Optimal Load Balancing Proceedings of the IPDPSW; Fourth IEEE International Workshop on High-Performance Big Data, Deep Learning, and Cloud Computing (HPBDC), Vol.2018, pp. 448-457, 2018 Felix Seibert, Mathias Peters, Florian Schintke BibTeX
DOI
Modeling Checkpoint Schedules for Concurrent HPC Applications CoSaS 2018 International Symposium on Computational Science at Scale, 2018 Masoud Gholami, Florian Schintke, Thorsten Schütt, Alexander Reinefeld BibTeX
Modelling the inner coma of comet 67P/Churyumov-Gerasimenko Europlanet Science Congress, p. EPSC2018-115-1, Vol.12, 2018 Tobias Kramer, Matthias Läuter BibTeX
OpenMP in VASP: Threading and SIMD International Journal of Quantum Chemistry, p. e25851, 2018 (in press) Florian Wende, Martijn Marsman, Jeongnim Kim, Fedor Vasilev, Zhengji Zhao, Thomas Steinke BibTeX
DOI
Radix sort for massively parallel hardware: a multi-GPU implementation Master's thesis, Freie Universität Berlin, Thomas Steinke, Katinka Wolter, Felix Höfling (Advisors), 2018 Alexander Kammeyer BibTeX
2017
Baroclinic waves on the β plane using low-order Discontinuous Galerkin discretisation Journal of Computational Physics, Vol.339, pp. 461-481, 2017 Thomas Orgis, Matthias Läuter, Dörthe Handorf, Klaus Dethloff BibTeX
DOI
Challenges in QCD matter physics – The scientific programme of the Compressed Baryonic Matter experiment at FAIR The European Physical Journal A, 2017 T. Ablyazimov, A. Abuhoza, R. P. Adak, Alexander Reinefeld, Florian Schintke, et al. BibTeX
DOI
Implementierung und Evaluation von Erasure Coding im verteilten Dateisystem XtreemFS Master's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2017 Johannes Dillmann BibTeX
In vivo bone remodeling rates determination and compressive stiffness variations before, during 60 days bed rest and two years follow up: a micro-FE-analysis from HR-pQCT measurements of the Berlin bed rest study-2 Acta Astronautica, Vol.132, pp. 67-77, 2017 Zully Ritter, Daniel Belavy, Wolfgang Baumann, Dieter Felsenberg BibTeX
DOI
KART - A Runtime Compilation Library for Improving HPC Application Performance High Performance Computing: ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers, Springer International Publishing, pp. 389-403, 2017 (preprint available as ZIB-Report 16-48) Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke PDF (ZIB-Report)
BibTeX
DOI
Modeling of Transient Absorption Spectra in Exciton Charge-Transfer Systems Journal of Physical Chemistry B, Vol.121, pp. 463-470, 2017 Tobias Kramer, Mirta Rodriguez, Yaroslav Zelinskyi BibTeX
DOI
arXiv
Notes on the Construction of Tablebases Bachelor's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Johannes Köbler (Advisors), 2017 (preprint available as ZIB-Report 17-59) Robert Clausecker PDF (ZIB-Report)
BibTeX
OpenCL in Scientific High Performance Computing: The Good, the Bad, and the Ugly Proceedings of the 5th International Workshop on OpenCL, pp. 12:1-12:3, IWOCL 2017, 2017 Matthias Noack BibTeX
DOI
Performance of Hybrid MPI/OpenMP VASP on Cray XC40 Based on Intel Knights Landing Many Integrated Core Architecture CUG Conference Proceedings, 2017 Zhengji Zhao, Martijn Marsman, Florian Wende, Jeongnim Kim PDF
BibTeX
Porting VASP from MPI to MPI+OpenMP [SIMD] Scaling OpenMP for Exascale Performance and Portability - 13th International Workshop on OpenMP, IWOMP 2017, Stony Brook, NY, USA, September 20-22, 2017, pp. 107-122, Vol.8766, LNCS, 2017 Florian Wende, Martijn Marsman, Zhengji Zhao, Jeongnim Kim BibTeX
DOI
Porting the MPI-parallelized LES model PALM to multi-GPU systems and many integrated core processors: an experience report International Journal of Computational Science and Engineering. Special Issue on: Novel Strategies for Programming Accelerators, 2017 (accepted for publication) Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen BibTeX
Seasonal changes of the volatile density in the coma and on the surface of comet 67P/Churyumov-Gerasimenko Monthly Notices of the Royal Astronomical Society, Vol.469, pp. S20-S28, 2017 Tobias Kramer, Matthias Läuter, Martin Rubin, Kathrin Altwegg BibTeX
DOI
arXiv
Supporting various interconnects in FLESnet using Libfabric CBM Progress Report 2016, pp. 159-160, 2017, ISBN: 978-3-9815227-4-7 Farouk Salem, Florian Schintke, Thorsten Schütt, Alexander Reinefeld BibTeX
The HARNESS Platform: A Hardware- and Network-Enhanced Software System for Cloud Computing Software Architecture for Big Data and the Cloud, Morgan Kaufmann, pp. 323-351, 2017, ISBN: 9780128054673 Jose Coutinho, Mark Stillwell, Katerina Argyraki, George Ioannidis, Anca Iordache, Christoph Kleineweber, Alexandros Koliousis, John McGlone, Guillaume Pierre, Carmelo Ragusa, Peter Sanders, Thorsten Schütt, Teng Yu, Alexander Wolf BibTeX
Time-dependent wave packet simulations of transport through Aharanov–Bohm rings with an embedded quantum dot Journal of Physics: Condensed Matter, 29(15), p. 155301, 2017 Christoph Kreisbeck, Tobias Kramer, Rafael Molina BibTeX
DOI
Two-dimensional electronic spectra of the photosynthetic apparatus of green sulfur bacteria Scientific Reports, Vol.7, p. 45245, 2017 Tobias Kramer, Mirta Rodriguez BibTeX
DOI
Weakening Paxos Consensus Sequences for Commutative Commands Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2017 (preprint available as ZIB-Report 17-64) Jan Skrzypczak PDF (ZIB-Report)
BibTeX
2016
Big Data Analytics on Cray XC Series DataWarp using Hadoop, Spark and Flink CUG Proceedings, 2016 Robert Schmidtke, Guido Laubender, Thomas Steinke PDF
BibTeX
Challenges facing an understanding of the nature of low-energy excited states in photosynthesis BBA Bioenergetics, 1857(9), pp. 1627-1640, 2016 Jeffrey R. Reimers, Malgorzata Biczysko, Douglas Bruce, David F. Coker, Terry J. Frankcombe, Hideki Hashimoto, Jürgen Hauer, Ryszard Jankowiak, Tobias Kramer, Juha Linnanto, Fikret Mamedov, Frank Müh, Margus Rätsep, Thomas Renger, Stenbjörn Styring, Jian Wan, Zhuan Wang, Zheng-Yu Wang-Otomo, Yu-Xiang Weng, Chunhong Yang, Jian-Ping Zhang, Arvi Freiberg, Elmars Krausz BibTeX
DOI
Dynamic SIMD Vector Lane Scheduling High Performance Computing, ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, pp. 354-365, Vol.9945, LNCS, 2016 Olaf Krzikalla, Florian Wende, Markus Höhnerbach BibTeX
DOI
Ende-zu-Ende Verschlüsselung in XtreemFS Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2016 Philippe Lieser BibTeX
Evaluating the Scalability of Scalaris Master's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2016 Jens Fischer BibTeX
Evaluierung autovektorisierender Compiler anhand von Schleifenklassen Bachelor's thesis, Freie Universität Berlin, Thomas Steinke, Katinka Wolter, Christian Maurer (Advisors), 2016 Alexander Kammeyer BibTeX
FFMK: A Fast and Fault-tolerant Microkernel-based System for Exascale Computing SPPEXA Symposium 2016, 2016 Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang Nagel BibTeX
DOI
Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications SPPEXA Symposium 2016, 2016 J. Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke BibTeX
DOI
GeoMultiSens – Scalable Multisensoral Analysis of Satellite Remote Sensing Data ESA Living Planet Symposium, EO Open Science Posters, 2016 Daniel Scheffler, Mike Sips, Robert Behling, Doris Dransch, Daniel Eggert, Jan Fajerski, Johann-Christoph Freytag, Patrick Griffiths, André Hollstein, Patrick Hostert, Patrick Köthur, Mathias Peters, Dirk Pflugmacher, Andreas Rabe, Alexander Reinefeld, Florian Schintke, Karl Segel BibTeX
Geomultisens – a common automatic processing and analysis system for multi-sensor satellite data Advancing Horizons for Land Cover Services Entering the Big Data Era, Second joint Workshop of the EARSeL Special Interest Group on Land Use & Land Cover and the NASA LCLUC Program, pp. 18-19, 2016 Daniel Scheffler, Mike Sips, Robert Behling, Doris Dransch, Daniel Eggert, Jan Fajerski, Johann-Christoph Freytag, Patrick Griffiths, André Hollstein, Patrick Hostert, Patrick Köthur, Mathias Peters, Dirk Pflugmacher, Andreas Rabe, Alexander Reinefeld, Florian Schintke, Karl Segel BibTeX
Impact of material and morphological parameters on the mechanical response of the lumbar spine - A finite element sensitivity study Journal of Biomechanics, Vol.53, pp. 185-190, 2016 Thomas Zander, Marcel Dreischarf, Anne-Katrin Timm, Wolfgang Baumann, Hendrik Schmidt BibTeX
DOI
Konzipierung und Implementierung eines Quota-Protokolls in objektbasierten Dateisystemen Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Ulf Leser (Advisors), 2016 Robert Bärhold BibTeX
On Enhancing 3D-FFT Performance in VASP CUG Proceedings, 2016 Florian Wende, Martijn Marsman, Thomas Steinke PDF
BibTeX
On the origin of inner coma structures observed by Rosetta during a diurnal rotation of comet 67P/Churyumov-Gerasimenko The Astrophysical Journal Letters, 823(1), p. L11, 2016 (preprint available as ZIB-Report 16-26) Tobias Kramer, Matthias Noack PDF (ZIB-Report)
BibTeX
DOI
Portable SIMD Performance with OpenMP* 4.x Compiler Directives Pierre-Francois Dutot, Denis Trystram (Eds.), Vol.Euro-Par 2016: Parallel Processing: 22nd International Conference on Parallel and Distributed Computing, LNCS, 2016, ISBN: 978-3-319-43659-3 Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Georg Zitzlsberger, Chris J. Newburn BibTeX
DOI
Thermal energy and charge currents in multi-terminal nanorings AIP Advances, Vol.6, p. 065306, 2016 Tobias Kramer, Christoph Kreisbeck, Christian Riha, Olivio Chiatti, Sven Buchholz, Andreas Wieck, Dirk Reuter, Saskia Fischer BibTeX
DOI
2015
Application Performance on a Cray XC30 Evaluation System with Xeon Phi Coprocessors at HLRN-III Cray User Group, 2015 Florian Wende, Matthias Noack, Thorsten Schütt, Stephen Sachs, Thomas Steinke BibTeX
Approximate Hash-Based Set Reconciliation for Distributed Replica Repair 2015 IEEE 34th International Symposium on Reliable Distributed Systems (SRDS), pp. 166-175, 2015 Nico Kruber, Maik Lange, Florian Schintke BibTeX
DOI
Bag-Of-SFA-Symbols in Vector Space (BOSS VS) ZIB-Report 15-30 Patrick Schäfer PDF
BibTeX
URN
DataWarp: First Experiences Cray User Group, 2015 Stefan Andersson, Stephen Sachs, Christian Tuma, Thorsten Schütt BibTeX
Graph and Model Transformation Springer-Verlag Berlin Heidelberg, 2015, ISBN: 978-3-662-47979-7 Hartmut Ehrig, Claudia Ermel, Ulrike Golas, Frank Hermann BibTeX
DOI
HLRN-III at Zuse Institute Berlin Contemporary High Performance Computing: From Petascale toward Exascale, Volume Two, Jeffrey S. Vetter (Ed.), Chapman and Hall/CRC, pp. 81-114, 2015, ISBN: 9781498700627 Wolfgang Baumann, Guido Laubender, Matthias Läuter, Alexander Reinefeld, Christian Schimmel, Thomas Steinke, Christian Tuma, Stefan Wollny BibTeX
Homogeneous dust emission and jet structure near active cometary nuclei: the case of 67P/Churyumov-Gerasimenko 2015 Tobias Kramer, Matthias Noack, Daniel Baum, Hans-Christian Hege, Eric J. Heller BibTeX
arXiv
OpenCL: There and Back Again High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, pp. 355-378, 2015, ISBN: 978-0-12-803819-2 Matthias Noack, Florian Wende, Klaus-Dieter Oertel BibTeX
Prevailing Dust-transport Directions on Comet 67P/Churyumov–Gerasimenko The Astrophysical Journal Letters, 813(2), p. L33, 2015 Tobias Kramer, Matthias Noack BibTeX
DOI
Quantum chemical ab initio prediction of proton exchange barriers between CH4 and different H-zeolites The Journal of Chemical Physics, 143(10), pp. 102810-1-102810-13, 2015 Christian Tuma, Joachim Sauer BibTeX
DOI
Resilience in Exascale Computing (Dagstuhl Seminar 14402) Dagstuhl Reports, 4(9), pp. 124-139, 2015 Hermann Härtig, Satoshi Matsuoka, Frank Mueller, Alexander Reinefeld BibTeX
DOI
SIMD Enabled Functions on Intel Xeon CPU and Intel Xeon Phi Coprocessor ZIB-Report 15-17 Florian Wende PDF
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Scalable Time Series Similarity Search for Data Analytics Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2015 Patrick Schäfer BibTeX
Scalable time series classification Data Mining and Knowledge Discovery, pp. 1-26, 2015 Patrick Schäfer BibTeX
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The Impact of Process Placement and Oversubscription on Application Performance: A Case Study for Exascale Computing Proceedings of the 3rd International Conference on Exascale Applications and Software, EASC 2015, A. Gray, L. Smith, M. Weiland (Eds.), pp. 13-18, 2015, ISBN: 978 -0-9 926615 -1-9 (preprint available as ZIB-Report 15-05) Florian Wende, Thomas Steinke, Alexander Reinefeld PDF
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Towards Local Confluence Analysis for Amalgamated Graph Transformation Graph Transformations. Proceedings of ICGT 2015, F. Parisi-Presicce, B. Westfechtel (Eds.), pp. 69-86, Vol.9151, Lecture Notes in Computer Science, 2015 (preprint available as ZIB-Report 15-29) Gabriele Taentzer, Ulrike Golas PDF (ZIB-Report)
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2014
A Gossiping Framework for Scalaris Bachelor's thesis, Freie Universität Berlin, Katinka Wolter, Florian Schintke (Advisors), 2014 Jens V. Fischer PDF
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A Relational Database Schema on the Transactional Key-Value Store Scalaris Proceedings of 2nd Workshop on Scalable Cloud Data Management, 2014 Nico Kruber, Florian Schintke, Michael Berlin BibTeX
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A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters SC '14: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. SC14, November 16-21, 2014, New Orleans, Louisiana, USA, 2014 Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes BibTeX
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An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects Euro-Par 2013: Parallel Processing Workshops, pp. 249-258, Vol.8374, Lecture Notes in Computer Science, 2014 (preprint available as ZIB-Report 13-46) Sebastian Dreßler, Thomas Steinke PDF (ZIB-Report)
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Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads Euro-Par 2014: Parallel Processing. 20th International Conference, Porto, Portugal, August 25-29, 2014, Proceedings, pp. 788-799, Vol.8632, Lecture Notes in Computer Science, 2014 Florian Wende, Frank Cordes, Thomas Steinke BibTeX
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Concurrent Kernel Offloading High Performance Parallelism Pearls, James Reinders, Jim Jeffers (Eds.), Morgan Kaufman, Elsevier, 2014, ISBN: 978-0128021187 (in press) Florian Wende, Thomas Steinke, Michael Klemm, Alexander Reinefeld BibTeX
Distributed Multi-Stage Time Series Similarity Search Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Joachim Fischer (Advisors), 2014 Svetlana Kulagina BibTeX
Experiencing the Shotgun Distance for Time Series Analysis Transactions on Machine Learning and Data Mining, 7(1), pp. 3-25, 2014 Patrick Schäfer PDF
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Finitary M-Adhesive Categories Mathematical Structures in Computer Science, 24(4), pp. 1-40, 2014 Karsten Gabriel, Benjamin Braatz, Hartmut Ehrig, Ulrike Golas BibTeX
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Formal Analysis of Model Transformations Based on Triple Graph Grammars Mathematical Structures in Computer Science, 24(4), pp. 1-57, 2014 Frank Hermann, Hartmut Ehrig, Ulrike Golas, Fernando Orejas BibTeX
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HAM - Heterogenous Active Messages for Efficient Offloading on the Intel Xeon Phi ZIB-Report 14-23 Matthias Noack PDF
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Hybrid Transactions for Intel’s Transactional Synchronization Extensions Master's thesis, Humboldt-Universität zu Berlin, Thomas Steinke, Alexander Reinefeld (Advisors), 2014 Gunnar Ruthenberg BibTeX
Integration of Intel Xeon Phi Servers into the HLRN-III Complex: Experiences, Performance and Lessons Learned CUG2014 Proceedings, 2014 (preprint available as ZIB-Report 14-15) Florian Wende, Guido Laubender, Thomas Steinke PDF
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M-Adhesive Transformation Systems with Nested Application Conditions. Part 1: Parallelism, Concurreny and Amalgamation Mathematical Structures in Computer Science, 24(4), pp. 1-48, 2014 Hartmut Ehrig, Ulrike Golas, A. Habel, L. Lambers, Fernando Orejas BibTeX
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Map Reduce on Distributed Hash Tables Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2014 Jan Fajerski BibTeX
Multi-Amalgamation of Rules with Application Conditions in M-Adhesive Categories Mathematical Structures in Computer Science, 24(4), pp. 1-68, 2014 Ulrike Golas, A. Habel, Hartmut Ehrig BibTeX
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Multi-threaded Kernel Offloading to GPGPU Using Hyper-Q on Kepler Architecture ZIB-Report 14-19 Florian Wende, Thomas Steinke, Frank Cordes PDF
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On Classifying Insects from their Wing-Beat: New Results Ecology and acoustics: emergent properties from community to landscape, Paris, France, 2014 Ilyas Potamitis, Patrick Schäfer PDF
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QoS-aware Storage Virtualization for Cloud File Systems Proceedings of the 1st ACM International Workshop on Programmable File Systems, pp. 19-26, PFSW '14, 2014 Christoph Kleineweber, Alexander Reinefeld, Thorsten Schütt BibTeX
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Request-Based Load Balancing in Distributed Hash Tables Master's thesis, Freie Universität Berlin, Agnès Voisard, Florian Schintke (Advisors), 2014 Maximilian Michels BibTeX
The BOSS is concerned with time series classification in the presence of noise Data Mining and Knowledge Discovery, 29(6), pp. 1505-1530, 2014 Patrick Schäfer BibTeX
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The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations Journal of Chemical Theory and Computation, 10(6), pp. 2232-2245, 2014 Jens Krüger, Richard Grunzke, Sandra Gesing, Sebastian Breuers, André Brinkmann, Luis de la Garza, Oliver Kohlbacher, Martin Kruse, Wolfgang Nagel, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Charlotta Schärfe, Thomas Steinke, Tobias Schlemmer, Klaus Dieter Warzecha, Andreas Zink, Sonja Herres-Pawlis BibTeX
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Towards Time Series Classification without Human Preprocessing MLDM 2014, pp. 228-242, Vol.8556, LNAI, 2014 Patrick Schäfer BibTeX
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2013
Analyzing the performance of SMP memory allocators with iterative MapReduce applications Parallel Computing, 39(12), pp. 879-889, 2013 Alexander Reinefeld, Thorsten Schütt, Robert Döbbelin BibTeX
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Approximate Algorithms for Distributed Systems Master's thesis, Freie Universität Berlin, Thorsten Schütt, Katinka Wolter (Advisors), 2013 Marie Hoffmann PDF
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Automated Analysis of Complex Data Objects 28th International Supercomputing Conference, ISC 2013, Leipzig, Germany, June 16-20, 2013, 2013 Sebastian Dreßler, Thomas Steinke BibTeX
Building Large Compressed PDBs for the Sliding Tile Puzzle Workshop on Computer Games, 2013 (preprint available as ZIB-Report 13-21) Robert Döbbelin, Thorsten Schütt, Alexander Reinefeld PDF (ZIB-Report)
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Checking Bisimilarity for Attributed Graph Transformation Foundations of Software Science and Computation Structures. Proceedings of FOSSACS 2013, Frank Pfenning (Ed.), pp. 113-128, Vol.7794, LNCS, 2013 Fernando Orejas, Artur Boronat, Ulrike Golas, Nikos Mylonakis BibTeX
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Consistency and Fault Tolerance of Distributed Storage Systems Doctoral thesis, Humboldt-Universität zu Berlin, 2013 Kathrin Sobe BibTeX
Consistent and Partition-Tolerant File Replication in the Cloud File System Xtreem FS Praxis der Informationsverarbeitung und Kommunikation, 36(1), p. 39, 2013 Michael Berlin BibTeX
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Dynamic Load Balancing on Massively Parallel Computer Architectures Bachelor's thesis, Freie Universität Berlin, Helmut Alt, Alexander Reinefeld, Thomas Steinke (Advisors), 2013 Florian Wende PDF
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Flexible Routing Tables in a Distributed Key-Value Store Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Björn Scheuermann (Advisors), 2013 Magnus Müller PDF
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Forward Perimeter Search with Controlled Use of Memory International Joint Conference on Artificial Intelligence, IJCAI-13, Beijing, 2013 Thorsten Schütt, Robert Döbbelin, Alexander Reinefeld PDF
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Implementierung und Evaluierung eines FPGA-basierten statischen Paketfilters Master's thesis, Humboldt-Universität zu Berlin, 2013 Uwe Reinbacher BibTeX
Konsistentes Hinzufügen und Entfernen von Replikaten in XtreemFS Bachelor's thesis, Freie Universität Berlin, Florian Schintke, Katinka Wolter (Advisors), 2013 Johannes Dillmann PDF
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Leistungsanalyse von XtreemFS als Ersatz für HDFS in Hadoop Bachelor's thesis, Freie Universität Berlin, Florian Schintke, Katinka Wolter (Advisors), 2013 Lukas Kairies PDF
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Leitfaden zum Forschungsdaten-Management Leitfaden zum Forschungsdaten-Management, Harry Enke, Jens Ludwig (Eds.), Verlag Werner Hülsbusch, Glückstadt, 2013 Harry Enke, Norman Fiedler, Thomas Fischer, Timo Gnadt, Erik Ketzan, Jens Ludwig, Torsten Rathmann, Gabriel Stöckle, Florian Schintke PDF
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Modeling the Impact of Solid Surfaces in Thermal Degradation Processes ChemPhysChem, Vol.14, pp. 88-91, 2013 Christian Tuma, Teodoro Laino, Elyette Martin, Steffen Stolz, Alessandro Curioni BibTeX
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Parameter selection and evaluation for programming of heterogeneous architectures Master's thesis, Freie Universität Berlin, 2013 Igor Merkulow BibTeX
RECODE: Reconfigurable, Consistent and Decentralized Data Services IEEE International Conference on Peer-to-Peer Computing (P2P’13), pp. 1-10, 2013 Mikael Högqvist, Alexander Reinefeld BibTeX
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Shooting Audio Recordings of Insects with SFA AmiBio Workshop, Bonn, Germany, 2013 Patrick Schäfer, Sebastian Dreßler BibTeX
Snapshots in Large-Scale Distributed File Systems Doctoral thesis, Humboldt-Universität zu Berlin, 2013 Jan Stender PDF
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Snapshots in Scalaris Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Florian Schintke (Advisors), 2013 Stefan Keidel PDF
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Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing Journal of Parallel and Distributed Computing, 73(11), pp. 1415-1416, Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke (Eds.), 2013 BibTeX
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Standards-based metadata management for molecular simulations Concurrency and Computation: Practice and Experience, 2013 Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang Nagel, Malcolm Atkinson, Jens Krüger BibTeX
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Swendsen-Wang Multi-Cluster Algorithm for the 2D/3D Ising Model on Xeon Phi and GPU Proceeding SC '13 Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis Article No. 83 ACM New York, NY, USA, 2013, 2013 (preprint available as ZIB-Report 13-44) Florian Wende, Thomas Steinke PDF (ZIB-Report)
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Tool-Supported Integration of Hardware Acceleration in Automotive CFD-Simulations NAFEMS 2013 Proceedings, 2013 F. Ries, M. Ditze, A. Piater, E. Singer, V. Fäßler, Sebastian Dreßler, T. Soddemann BibTeX
XtreemFS & Scalaris Science & Technology, pp. 54-55, 2013 Florian Schintke BibTeX
XtreemFS – a File System for the Cloud Data Intensive Storage Services for Cloud Environments, D. Kyriazis, A. Voulodimos, S. Gogouvitis, Theodora A. Varvarigou (Eds.), IGI Global, 2013 Jan Stender, Michael Berlin, Alexander Reinefeld BibTeX
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Übersicht über die Datenhaltung im ZIB und die Möglichkeiten einer Nutzung durch Projekte ZIB-Report 13-16 Wolfgang Pyszkalski PDF
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2012
A Collaborative Data Management Infrastructure for Climate Data Analysis Geophysical Research Abstracts, Vol.14, EGU2012-10569, 2012 S. Kindermann, Florian Schintke, B. Fritzsch BibTeX
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A Data Driven Science Gateway for Computational Workflows Proceedings of the UNICORE Summit, 2012 Richard Grunzke, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ralph Müller-Pfefferkorn, Patrick Schäfer, Bernd Schuller, Thomas Steinke, Andreas Zink BibTeX
A General Attribution Concept for Models in M- adhesive Transformation Systems: Long Version ZIB-Report 12-22 (A short version appeared in: Graph Transformation, 6th International Conference, ICGT 2012, Bremen, Germany, September 24-29, 2012, Proceedings. Lecture Notes in Computer Science, Vol. 7562 . 2012. Pp.187-202) Ulrike Golas PDF
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A General Attribution Concept for Models in M-Adhesive Transformation Systems Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 187-202, Vol.7562, LNCS, 2012 Ulrike Golas BibTeX
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A Local-Global Model for Multiagent Systems - Sheaves on the Category MAS Proceedings of ICAART 2012, J. Filipe, A. Fred (Eds.), pp. 331-334, Vol.2, 2012 T. Soboll, Ulrike Golas BibTeX
A Novel Hybrid Approach to Automatically Determine Kernel Interface Data Volumes ZIB-Report 12-23 Sebastian Dreßler, Thomas Steinke PDF
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A Science Gateway Getting Ready for Serving the International Molecular Simulation Community Proceedings of Science, Vol.PoS(EGICF12-EMITC2)050, 2012 Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke BibTeX
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics Journal of Grid Computing, 2012 Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Akos Balasko, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Peter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher BibTeX
A fault-tolerant and scalable protocol for replication in distributed file systems Doctoral thesis, Humboldt-Universität zu Berlin, 2012 Björn Kolbeck BibTeX
An Analysis of SMP Memory Allocators Proceedings of the 41st International Conference on Parallel Processing Workshops (Fifth International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2)), pp. 48-54, 2012 Robert Döbbelin, Thorsten Schütt, Alexander Reinefeld BibTeX
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Application of Regenerating Codes for Fault Tolerance in Distributed Storage Systems Network Computing and Applications (NCA), 2012 11th IEEE International Symposium on, pp. 67-70, 2012 Kathrin Peter, Peter Sobe BibTeX
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Attributed Graph Transformation with Inheritance Theoretical Computer Science, Vol.424, pp. 46-68, 2012 Ulrike Golas, L. Lambers, Hartmut Ehrig, Fernando Orejas BibTeX
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Consistency and fault tolerance for erasure-coded distributed storage systems Proceedings of the fifth international workshop on Data-Intensive Distributed Computing Date, pp. 23-32, DIDC ’12, 2012 Kathrin Peter, Alexander Reinefeld BibTeX
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Consistent Key-Based Routing in Decentralized and Reconfigurable Data Services Doctoral thesis, Humboldt-Universität zu Berlin, 2012 Mikael Högqvist BibTeX
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Effiziente Reparatur von Repliken in Distributed Hash Tables Master's thesis, Humboldt-Universität zu Berlin, 2012 Maik Lange PDF
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Energy consumption of CUDA kernels with varying thread topology Computer Science - Research and Development, pp. 1-9, 2012 Sebastian Dreßler, Thomas Steinke BibTeX
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Erweiterung eines verteilten Key-Value-Stores (Riak) um einen räumlichen Index Bachelor's thesis, Freie Universität Berlin, 2012 Philipp Borgers BibTeX
Handling Big Data in Astronomy and Astrophysics Datenbank-Spektrum, 12(3), pp. 173-181, 2012 Harry Enke, Adrian Partl, Alexander Reinefeld, Florian Schintke BibTeX
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High-Performance Reconfigurable Computing - editorial for Special Issue of the International Journal of Reconfigurable Computing International Journal of Reconfigurable Computing, Vol.2012, pp. 1-2, 2012 Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke BibTeX
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M-Adhesive Transformation Systems with Nested Application Conditions. Part 2 Fundamenta Informaticae, 118(1-2), pp. 35-63, 2012 Hartmut Ehrig, Ulrike Golas, A. Habel, L. Lambers, Fernando Orejas BibTeX
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MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment Journal of Cheminformatics, 4(Suppl 1), p. 21, 2012 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
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On Improving the Performance of Multi-threaded CUDA Applications with Concurrent Kernel Execution by Kernel Reordering Application Accelerators in High Performance Computing (SAAHPC), 2012 Symposium on, pp. 74-83, 2012 Florian Wende, Frank Cordes, Thomas Steinke BibTeX
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Parallelism and Concurrency of Stochastic Graph Transformations Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 96-110, Vol.7562, LNCS, 2012 R. Heckel, Hartmut Ehrig, Ulrike Golas, Frank Hermann BibTeX
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Proceedings of ACCAT 2012 Electronic Proceedings in Theoretical Computer Science 93, Ulrike Golas, T. Soboll (Eds.), 2012 BibTeX
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Rechnerorganisation Hütte – Das Ingenieurwissen, Horst Czichos, Manfred Hennecke (Eds.), Springer-Verlag Berlin, 34, pp. J6-J124, 2012 T. Flik, Alexander Reinefeld BibTeX
SFA : a symbolic fourier approximation and index for similarity search in high dimensional datasets Proceedings of the 15th International Conference on Extending Database Technology, pp. 516-527, EDBT ’12, 2012 Patrick Schäfer, Mikael Högqvist BibTeX
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The MoSGrid Community – From National to International Scale EGI Community Forum 2012, 2012 Sandra Gesing, Sonja Herres-Pawlis, Georg Birkenheuer, Andre Brinkmann, Richard Grunzke, Peter Kacsuk, Oliver Kohlbacher, Miklos Kozlovszky, Jens Krüger, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke BibTeX
Towards Bridging the Gap between Formal Foundations and Current Practice for Triple Graph Grammars - Flexible Relations between Source and Target Elements Proceedings of ICGT 2012, Hartmut Ehrig, G. Engels, H.-J. Kreowski, G. Rozenberg (Eds.), pp. 141-155, Vol.7562, LNCS, 2012 Ulrike Golas, L. Lambers, Hartmut Ehrig, H. Giese BibTeX
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Überlastungsschutz mit Anfragepriorisierung für das Internetdateisystem XtreemFS Master's thesis, Freie Universität Berlin, 2012 Felix Langner BibTeX
2011
A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science Journal of Cheminformatics 2011, 3(Suppl 1), 2011 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
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A Science Gateway for Molecular Simulations EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts, pp. 94-95, 2011 Sandra Gesing, Peter Kacsuk, Miklos Kozlovszky, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Richard Grunzke, Sonja Herres-Pawlis, Jens Krüger, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Anna Szikszay Fabri, Klaus Dieter Warzecha, Martin Wewior, Oliver Kohlbacher BibTeX
A Visual Interpreter Semantics for Statecharts Based on Amalgamated Graph Transformation ECEASST, Vol.39, pp. 1-24, 2011 Ulrike Golas, E. Biermann, Hartmut Ehrig, Claudia Ermel BibTeX
AstroGrid-D: Grid technology for astronomical science New Astronomy, 16(2), pp. 79-93, 2011 Harry Enke, Matthias Steinmetz, Hans-Martin Adorf, Alexander Beck-Ratzka, Frank Breitling, Thomas Brüsemeister, Arthur Carlson, Torsten Ensslin, Mikael Högqvist, Iliya Nickelt, Thomas Radke, Alexander Reinefeld, Angelika Reiser, Tobias Scholl, Rainer Spurzem, Jürgen Steinacker, Wolfgang Voges, Joachim Wambsganß, Steve White BibTeX
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Flease - Lease Coordination Without a Lock Server Parallel and Distributed Processing Symposium, International, Vol.0, pp. 978-988, 2011 Björn Kolbeck, Mikael Högqvist, Jan Stender, Felix Hupfeld BibTeX
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Formal Specification of Model Transformations by Triple Graph Grammars with Application Conditions ECEASST, Vol.39, pp. 1-26, 2011 Ulrike Golas, Hartmut Ehrig, Frank Hermann BibTeX
Functorial Analysis of Algebraic Higher-Order Net Systems with Applications to Mobile Ad-Hoc Networks ECEASST, Vol.40, pp. 1-20, 2011 Ulrike Golas, Kathrin Hoffmann, Hartmut Ehrig, A. Rein, J. Padberg BibTeX
Generische Templates zur Kommunikation in heterogenen Manycore-Systemen Master's thesis, Humboldt-Universität zu Berlin, 2011 Sebastian Borchert BibTeX
Granular Security for a Science Gateway in Structural Bioinformatics Proc. IWSG-Life 2011, 2011 Sandra Gesing, Richard Grunzke, Akos Balasko, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Peter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher BibTeX
Interaktive Vervollständigung der Szenariobasierten Spezifikation eines Parkassistenzsystems Proceedings of GI-ASE 2011, H.-U. Heiß, P. Pepper, H. Schlingloff, Jörg Schneider (Eds.), GI-Edition LNI, 2011 F. Chabarek, Ulrike Golas BibTeX
Kürzeste-Wege-Suche mit Grafikkarten Master's thesis, Humboldt-Universität zu Berlin, 2011 Bert Münnich BibTeX
Latency-Optimal Walks in Replicated and Partitioned Graphs Database Systems for Adanced Applications, Jianliang Xu, Ge Yu, Shuigeng Zhou, Rainer Unland (Eds.), Springer Berlin / Heidelberg, pp. 14-27, 2011 Stefan Plantikow, Maik Jorra BibTeX
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MR-search: massively parallel heuristic search Concurrency and Computation: Practice and Experience, 25(1), pp. 40-54, 2011 Thorsten Schütt, Alexander Reinefeld, Robert Döbbelin BibTeX
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Massiv-parallele Suche und effiziente Heuristiken Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2011 Robert Maier PDF
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MoSGrid: Progress of Workflow driven Chemical Simulations Proc. of Grid Workflow Workshop 2011, Cologne, Germany, Vol.826, 2011 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, Andre Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Johannes Schuster, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
Popularitätsbasierte Anpassung des Replikationsfaktors in verteilten Dateisystemen Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld (Advisor), 2011 Michael Berlin BibTeX
Reliability Study of Coding Schemes for Wide-Area Distributed Storage Systems PDP 2011: The 19th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, 2011 Kathrin Peter BibTeX
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Solutions for biomedical grid computing – Case studies from the D-Grid project Services@MediGRID Journal of Computational Science, -(0), 2011 Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax BibTeX
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The Benefits of Estimated Global Information in DHT Load Balancing Cluster Computing and the Grid, IEEE International Symposium on, Vol.0, pp. 382-391, 2011 Nico Kruber, Mikael Högqvist, Thorsten Schütt BibTeX
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2010
BabuDB: Fast and Efficient File System Metadata Storage Storage Network Architecture and Parallel I/Os, IEEE International Workshop on, pp. 51-58, 2010 Jan Stender, Björn Kolbeck, Mikael Högqvist, Felix Hupfeld BibTeX
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Beyond online aggregation: Parallel and incremental data mining with online Map-Reduce Proceedings of the 2010 Workshop on Massive Data Analytics on the Cloud, pp. 3:1-3:6, MDAC ’10, 2010 Joos-Hendrik Böse, Artur Andrzejak, Mikael Högqvist BibTeX
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Circular permuted proteins in the universe of protein folds Proteins, Vol.78, pp. 1618-1630, 2010 T. Schmidt-Goenner, A. Guerler, Björn Kolbeck, E. Knapp BibTeX
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Decision Model for Cloud Computing under SLA Constraints Modeling, Analysis & Simulation of Computer and Telecommunication Systems (MASCOTS), 2010 IEEE International Symposium on, pp. 257-266, 2010 Artur Andrzejak, Derrick Kondo, Sangho Yi BibTeX
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Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms Symposium on Application Accelerators in High Performance Computing (SAAHPC), 2010 Thomas Steinke, Kathrin Peter, Sebastian Borchert BibTeX
Enhanced Paxos Commit for Transactions on DHTs CCGRID, pp. 448-454, 2010 (preprint available as ZIB-Report 09-28) Florian Schintke, Alexander Reinefeld, Seif Haridi, Thorsten Schütt PDF (ZIB-Report)
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Exploiting non-dedicated resources for cloud computing 12th IEEE/IFIP Network Operations & Management Symposium (NOMS 2010), pp. 341-348, 2010 Artur Andrzejak, Derrick Kondo, David Anderson BibTeX
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Fault-Tolerant and Decentralized Lease Coordination in Distributed Systems ZIB-Report 10-02 Björn Kolbeck, Mikael Högqvist, Jan Stender, Felix Hupfeld PDF
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In vivo tibial compressive stiffness variations after HR-pQCT measurements of 60 days immobility during the Berlin bed rest study II using μfinite element analysis 6th World Congress of Biomechanics (WCB 2010), August 1-6, 2010 Singapore: In Conjunction with 14th International Conference on Biomedical Engineering (ICBME) and 5th Asia Pacific Conference on Biomechanics (APBiomech), pp. 823-826, Vol.31, IFMBE Proceedings, 2010 Zully Ritter, Wolfgang Baumann, Dieter Felsenberg BibTeX
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Loosely Time-Synchronized Snapshots in Object-Based File Systems Proceedings of the 29th IEEE International Performance, Computing, and Communications Conference, 2010 Jan Stender, Mikael Högqvist, Björn Kolbeck BibTeX
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Management verteilter Daten in Grid- und Peer-to-Peer-Systemen Doctoral thesis, Humboldt-Universität zu Berlin, 2010 Florian Schintke BibTeX
MoSGrid – A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science 6. German Conference on Chemoinformatics, 2010 Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, I. d. Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
Molecular Simulation Grid 6. German Conference on Chemoinformatics, 2010 Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, U. Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus Dieter Warzecha, Martin Wewior BibTeX
On-Line Processing of Streams and Time Series – An Evaluation Master's thesis, Humboldt-Universität zu Berlin, 2010 Matthias Beick BibTeX
Opportunities and challenges for digital morphology Biology Direct, 5(1), p. 45, 2010 Alexander Ziegler, Malte Ogurreck, Thomas Steinke, Felix Beckmann, Steffen Prohaska, Andreas Ziegler BibTeX
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PTGL: a database for secondary structure-based protein topologies Nucleic Acids Res., Vol.38, pp. D326-330, 2010 Patrick May, A. Kreuchwig, Thomas Steinke, Ina Koch BibTeX
Peer-to-Peer Computing Euro-Par 2010 - Parallel Processing, pp. 444-445, Vol.6271, LNCS, 2010 Adriana Iamnitchi, Paolo Trunfio, Jonathan Ledlie, Florian Schintke BibTeX
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Performance Analysis of Diffusion Tensor Imaging in an Academic Production Grid CCGRID, pp. 751-756, 2010 Dagmar Krefting, Ralf Lützkendorf, Kathrin Peter, Johannes Bernarding BibTeX
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Perspectives on Grid Computing Future Generation Computer Systems, 26(8), pp. 1104-1115, 2010 Uwe Schwiegelshohn, Rosa M. Badia, Marian Bubak, Marco Danelutto, Schahram Dustdar, Fabrizio Gagliardi, Alfred Geiger, Ladislav Hluchy, Dieter Kranzlmüller, Erwin Laure, Alexander Reinefeld, Michael Resch, Andreas Reuter, Otto Rienhoff, Thomas Rüter, Peter Sloot, Domenico Talia, Klaus Ullmann, Ramin Yahyapour, Gabriele von Voigt BibTeX
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Range queries in distributed hash tables Doctoral thesis, Humboldt-Universität zu Berlin, 2010 Thorsten Schütt BibTeX
Reducing Costs of Spot Instances via Checkpointing in the Amazon Elastic Compute Cloud Cloud Computing (CLOUD), 2010 IEEE 3rd International Conference on, pp. 236-243, 2010 Sangho Yi, Derrick Kondo, Artur Andrzejak BibTeX
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Self-organized aggregation in irregular wireless networks Proceedings of the 3rd IFIP Wireless Days Conference 2010, pp. 1-7, 2010 Joanna Geibig, Dirk Bradler BibTeX
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Simulation of Spin Models on Nvidia Graphics Cards using CUDA Master's thesis, Humboldt-Universität zu Berlin, Ulrich Wolff, Michael Müller-Preussker, Hinnerk Stüben (Advisors), 2010 Florian Wende BibTeX
The Clouds of Revolution Public Service Review 19, pp. 449, 2010 P. Van Roy, Seif Haridi, Alexander Reinefeld, J. B. Stefani BibTeX
Very large pattern databases for heuristic search HPDC, Salim Hariri, Kate Keahey (Eds.), pp. 803-809, 2010 Alexander Reinefeld, Thorsten Schütt, Robert Döbbelin BibTeX
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2009
A Protocol for Efficient and Fault-tolerant File Replication over Wide-Area Networks TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, Vol.0, p. 19, 2009 Björn Kolbeck BibTeX
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A Scalable, Transactional Data Store for Future Internet Services Towards the Future Internet - A European Research Perspective, G. Tselentis, J. Domingue, A. Galis, A. Gavras, D. Hausheer, S. Krco, V. Lotz, T. Zahariadis (Eds.), IOS Press, pp. 148-159, 2009 Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Seif Haridi BibTeX
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Architecture and Self-Tuning of a DISC-system TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, p. 16, 2009 Mikael Högqvist BibTeX
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Causal weak-consistency replication – a systems approach Doctoral thesis, Humboldt-Universität zu Berlin, 2009 Felix Hupfeld BibTeX
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Co-Reservation of Resources in the Grid Doctoral thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek, H.-U. Heiß (Advisors), 2009, ISBN: 978-3-86853-137-4 Thomas Röblitz PDF
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Connecting Communities on the Meta-Scheduling Level: The DGSI Approach Proceedings of the Cracow Grid Workshop (CGW), pp. 96-103, 2009 Georg Birkenheuer, Arthur Carlson, Alexander Fölling, Mikael Högqvist, Andreas Hoheisel, Alexander Papaspyrou, Klaus Rieger, Bernhard Schott, Wolfgang Ziegler BibTeX
DHT Load Balancing with Estimated Global Information Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek (Advisors), 2009 Nico Kruber PDF
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Diffusions-Tensor-Imaging als Gridanwendung - Perfomanzsteigerung und standortunabhängiger Zugang zu leistungsfähigen Ressourcen GI Jahrestagung’09, pp. 1233-1240, 2009 Frank Hertel, Dagmar Krefting, Ralf Lützkendorf, Fred Viezens, Andreas Thiel, Kathrin Peter, Johannes Bernarding BibTeX
Distributed Erasure Tolerant Storage with Solid State Technology TCPP Ph.D. Forum, Int. Parallel and Distributed Processing Symposium, p. 23, 2009 Kathrin Peter BibTeX
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Efficient Management of Consistent Backups in a Distributed File System COMPSAC (1), pp. 656-659, 2009 Jan Stender BibTeX
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Ein Peer-to-Peer System mit Bereichsabfragen in PlanetLab Master's thesis, Freie Universität Berlin, Jochen Schiller, Alexander Reinefeld (Advisors), 2009 Christian von Prollius PDF
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Ein Userspace-Dateisystem zur Verwaltung von Grid-Daten Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2009 Roland Tuschl PDF
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Ein agglomeratives, gossipbasiertes Clustering-Verfahren für verteilte Systeme implementiert in Scalaris Bachelor's thesis, Freie Universität Berlin, 2009 Marie Hoffmann BibTeX
Ein eingebettetes Hauptspeicher-Datenbanksystem mit Snapshot-Reads Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Jens-Peter Redlich (Advisors), 2009 Daniel Mauter PDF
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FaTLease: scalable fault-tolerant lease negotiation with Paxos Cluster Computing, 12(2), pp. 175-188, 2009 Felix Hupfeld, Björn Kolbeck, Jan Stender, Mikael Högqvist, Toni Cortes, Jonathan Martí, Jesus Malo BibTeX
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Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors Algorithms, 2(2), pp. 692-709, 2009 Raphael Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz Bujnicki, Robert Preissner BibTeX
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Generalizing the Data Management of Three Community Grids Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009 Stefan Plantikow, Kathrin Peter, Mikael Högqvist, Christian Grimme, Alexander Papaspyrou BibTeX
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Generic Self-Healing via Rejuvenation: Challenges, Status Quo, and Solutions Workshop on Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009 Artur Andrzejak BibTeX
Gossip-based Topology Inference for Efficient Overlay Mapping on Data Centers Peer-to-Peer Computing, pp. 147-150, 2009 Thorsten Schütt, Alexander Reinefeld, Florian Schintke, Marie Hoffmann BibTeX
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Heuristic Search Encyclopedia of Optimization, pp. 1506-1508, Christodoulos Floudas, Panos Pardalos (Eds.), Springer, 2009 Alexander Reinefeld BibTeX
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Improving the Dependability of Grids via Short-Term Failure Predictions CoreGRID Workshop at EuroPAR 2009, 2009 Artur Andrzejak, Demetris Zeinalipour, Marios Dikaiakos BibTeX
Leistungsverbesserung der Datenübertragung bei der Replikation von nicht veränderlichen Dateien in einem verteilten Dateisystem Master's thesis, Technische Universität Berlin, 2009 Christian Lorenz BibTeX
MediGRID: Towards A User Friendly Secured Grid Infrastructure Future Generation Computer Systems (FGCS), 25(3), pp. 281-289, 2009 Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michael Vossberg, Fred Viezens, Anette Weisbecker BibTeX
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Out-of-Core Parallel Frontier Search with MapReduce HPCS, pp. 323-336, Vol.5976, Lecture Notes in Computer Science, 2009 Alexander Reinefeld, Thorsten Schütt BibTeX
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Parallel Heuristic Search Encyclopedia of Optimization, Christodoulos Floudas, Panos Pardalos (Eds.), Springer, pp. 2908-2912, 2009 Alexander Reinefeld BibTeX
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Passive/Active Load Balancing with Informed Node Placement in DHTs IWSOS, Thrasyvoulos Spyropoulos, Karin Hummel (Eds.), pp. 101-112, Vol.5918, Lecture Notes in Computer Science, 2009 Mikael Högqvist, Nico Kruber BibTeX
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Performanzsteigerung von Diffusion Tensor Image Analyse durch Nutzung gridbasierter Workflows GMDS, 2009 Ralf Lützkendorf, Fred Viezens, Frank Hertel, Dagmar Krefting, Kathrin Peter, Johannes Bernarding BibTeX
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Self-Adaptation in Large-Scale Systems: A Study on Structured Overlays Across Multiple Datacenters Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009 Thorsten Schütt, Alexander Reinefeld, Florian Schintke, C. Hennig BibTeX
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Special Section D-Grid Future Generation Comp. Syst., 25(3), pp. 266-267, 2009 Wolfgang Gentzsch, Alexander Reinefeld BibTeX
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Towards Explicit Data Placement in Scalable Key/Value Stores Architectures and Languages for Self-Managing Distributed Systems (SelfMan@SASO), 2009 Mikael Högqvist, Stefan Plantikow BibTeX
Transactional DHT Algorithms ZIB-Report 09-34 Monika Moser, Seif Haridi, Tallat Shafaat, Thorsten Schütt, Mikael Högqvist, Alexander Reinefeld PDF
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Visualization in Health Grid Environments: A Novel Service and Business Approach GECON, pp. 150-159, Vol.5745, Lecture Notes in Computer Science, 2009 Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias Knoch, Ulrich Sax BibTeX
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Work in Progress: Building a Distributed Generic Stress Tool for Server Performance and Behavior Analysis ICAS, pp. 342-345, 2009 Ada Casanovas, Javier Alonso, Jordi Torres, Artur Andrzejak BibTeX
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2008
A Peer-to-Peer Framework for Resource Discovery in Large-Scale Grids Achievements in European Research on Grid Systems, Sergei Gorlatch, Marian Bubak, Thierry Priol (Eds.), Springer US, pp. 123-137, 2008 Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist BibTeX
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A Transactional Scalable Distributed Data Store 1st IEEE International Scalable Computing Challenge, co-located with CCGrid’08, 2008 Thorsten Schütt, Monika Moser, Stefan Plantikow, Florian Schintke, Alexander Reinefeld BibTeX
An Efficient Protocol for Reserving Multiple Grid Resources in Advance Proceedings of the 3$^rd$ CoreGRID Workshop on Grid Middleware, 2008 Jörg Schneider, Julius Gehr, Barry Linnert, Thomas Röblitz BibTeX
Continous Queries over Federated Social Networks Fourth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2008), 2008 Stefan Plantikow, Mikael Högqvist BibTeX
Ensuring Collective Availability in Volatile Resource Pools via Forecasting 19th IEEE/IFIP Distributed Systems: Operations and Management (DSOM-2008), pp. 149-161, 2008 Artur Andrzejak, Derrick Kondo, David Anderson BibTeX
FaTLease: Scalable Fault-Tolerant Lease Negotiation with Paxos ACM/IEEE International Symposium on High Performance Distributed Computing (HPDC), 2008 Felix Hupfeld, Björn Kolbeck, Jan Stender, Mikael Högqvist, Toni Cortes, Jonathan Martí, Jesus Malo BibTeX
Flexible Parameterization of XOR based Codes for Distributed Storage Proceedings of The Seventh IEEE International Symposium on Networking Computing and Applications, NCA 2008, July 10-12, 2008, Cambridge, Massachusetts, USA, pp. 101-110, 2008 Peter Sobe, Kathrin Peter BibTeX
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Global Optimization for Scheduling Multiple Co-Reservations in the Grid Proceedings of the CoreGRID Symposium 2008, 2008 Thomas Röblitz BibTeX
Grid Architectural Issues: State-of-the-art and Future Trends Institute on Architectural Issues: Scalability, Dependability, Adaptability, CoreGRID - Network of Excellence, 2008 Artur Andrzejak, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Carlo Mastroianni, Paraskevi Fragopoulou, Derrick Kondo, Paul Malecot, Gheorghe Cosmin Silaghi, Luis Moura Silva, Paolo Trunfio, Demetris Zeinalipour-Yazti, Eugenio Zimeo BibTeX
Key-Based Consistency and Availability in Structured Overlay Networks International ICST Conference on Scalable Information Systems, 2008 Tallat Shafaat, Monika Moser, Ali Ghodsi, Thorsten Schütt, Seif Haridi, Alexander Reinefeld BibTeX
On Consistency of Data in Structured Overlay Networks Coregrid Integration Workshop, 2008 Tallat Shafaat, Monika Moser, Ali Ghodsi, Thorsten Schütt, Alexander Reinefeld BibTeX
On Correlated Availability in Internet-Distributed Systems 9th IEEE/ACM International Conference on Grid Computing (Grid 2008), 2008 Derrick Kondo, Artur Andrzejak, David Anderson BibTeX
Performance of Quantum Chromodynamics (QCD) Simulations on the SGI Altix ZIB-Report 08-54 (Appeared in: Computational Methods in Science and Technology 14(2) (2008) 69-75) Mohammed Allalen, Matthias Brehm, Hinnerk Stüben PDF
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Range Queries on structured overlay networks Computer Communications, 31(2), pp. 280-291, 2008 Thorsten Schütt, Florian Schintke, Alexander Reinefeld BibTeX
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Scalaris: Reliable Transactional P2P Key/Value ERLANG '08: Proceedings of the 7th ACM SIGPLAN workshop on ERLANG, pp. 41-47, 2008 Thorsten Schütt, Florian Schintke, Alexander Reinefeld BibTeX
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Self Management for Large-Scale Distributed Systems Formal Methods for Components and Objects 2007 (FMCO 2007), 2008 P. Roy, Seif Haridi, Alexander Reinefeld, J. B. Stefani, R. Yap, T. Coupaye BibTeX
Signalanalyse von Polysomnographien unter Verwendung einer Gridinfrastruktur GMDS 2008, 2008 Dagmar Krefting, Sebastian Canisius, Kathrin Peter, Thomas Tolxdorff, Thomas Penzel BibTeX
Simulations of QCD in the Era of Sustained Tflop/s Computing ZIB-Report 07-48 (Appeared in C. Bischof, M. Brückner, P. Gibbon, G. Goubert, T. Lippert, B. Mohr, F. Peters (Eds.), Parallel Computing: Architectures, Algorithms and Applications, NIC Series, Vol. 38 (2007), 535--542.) Thomas Streuer, Hinnerk Stüben PDF
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Sloppy Management of Structured P2P Services Proceedings of the 3$^rd$ International Workshop on Hot Topics in Autonomic Computing (HotAC III), co-located with IEEE ICAC’08, 2008 Paolo Costa, Guillaume Pierre, Alexander Reinefeld, Thorsten Schütt, Maarten van Steen BibTeX
Specifying and Processing Co-Reservations in the Grid Proceedings of the 9$^th$ Workshop on Parallel Systems and Algorithms, 2008 Thomas Röblitz BibTeX
Striping without Sacrifices: Maintaining POSIX Semantics in a Parallel File System Proceedings of the 1st USENIX Workshop on Large-Scale Computing (LASCO’08), 2008 Jan Stender, Björn Kolbeck, Felix Hupfeld, Eugenio Cesario, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Martí BibTeX
The XtreemFS architecture - A case for object-based file systems in Grids Concurrency and Computation: Practice and Experience, 20(8), 2008 Felix Hupfeld, Toni Cortes, Björn Kolbeck, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Marti, Jan Stender, Eugenio Cesario BibTeX
Transactions and Concurrency Control for Peer-to-Peer-Wikis: An Evaluation Making Grids Work, Marco Danelutto, Paraskevi Fragopoulou, Vladimir Getov (Eds.), pp. 337-349, 2008 Stefan Plantikow, Alexander Reinefeld, Florian Schintke BibTeX
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Using Global Information for Load Balancing in DHTs Workshop on Decentralized Self Management for Grids, P2P, and User Communities, 2008 Mikael Högqvist, Seif Haridi, Nico Kruber, Alexander Reinefeld, Thorsten Schütt BibTeX
Visualizing Transactional Algorithms for DHTs IEEE P2P Conference, 2008 B. Mejías, Mikael Högqvist, P. Roy BibTeX
XtreemOS: A Vision for a Grid Operating System XtreemOS European Integrated Project, 2008 Toni Cortes, Carsten Franke, Yvon Jégou, Thilo Kielmann, Domenico Laforenza, Brian Matthews, Christine Morin, Luis Prieto, Alexander Reinefeld BibTeX
2007
A Fault-Injector Tool to Evaluate Failure Detectors in Grid-services CoreGRID Workshop on Grid Programming Model Grid and P2P Systems Architecture Grid Systems, 2007 Nuno Rodrigues, Decio Sousa, Luis Silva, Artur Andrzejak BibTeX
A Structured Overlay for Multi-dimensional Range Queries Euro-Par Conference, Anne-Marie Kermarrec (Ed.), pp. 503-513, Vol.4641, LNCS, 2007 Thorsten Schütt, Florian Schintke, Alexander Reinefeld BibTeX
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Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs GCCB, W. Dubitzky (Ed.), pp. 19-32, Vol.4360, Lecture Notes in Bioinformatics, 2007 Patrick May, Gunnar Klau, Markus Bauer, Thomas Steinke BibTeX
AstroGrid-D: Enhancing Astronomic Science with Grid Technology German e-Science Conference, 2007 Harry Enke, Matthias Steinmetz, Thomas Radke, Angelika Reiser, Thomas Röblitz, Mikael Högqvist BibTeX
Atomic Commitment in Transactional DHTs Proceedings of the CoreGRID Symposium, 2007 Monika Moser, Seif Haridi BibTeX
Combining Compression, Encryption and Fault-tolerant Coding for Distributed Storage 21th International Parallel and Distributed Processing Symposium (IPDPS 2007) Proceedings, pp. 1-8, 2007 Peter Sobe, Kathrin Peter BibTeX
Das Berliner Wissenschaftsnetz BRAIN 2007 ZIB-Report 07-42 Hubert Busch, Ursula Droebes, Marek Fröhlich, Christian Schimmel PDF
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Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions Journal of Molecular Modeling, 13(2), pp. 335-345, 2007 Michael Meyer, Thomas Steinke, Jürgen Sühnel BibTeX
Deterministic Models of Software Aging and Optimal Rejuvenation Schedules 10th IFIP/IEEE Symposium on Integrated Management (IM 2007), 2007 Artur Andrzejak, Luis Silva BibTeX
Device and method for retrieving / storing electronic data in a system with a plurality of data processing units United States Patent Application Publication No. US 2007/0165619 A1, 2007 Alexander Reinefeld, Florian Schintke, Thorsten Schütt BibTeX
Distributed Wikis on Structured Overlays CoreGrid Workshop on Grid Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 2007 Stefan Plantikow, Alexander Reinefeld, Florian Schintke BibTeX
High-Available Grid Services through the use of Virtualized Clustering IEEE-GRID, 2007 Javier Alonso, Luis Silva, Artur Andrzejak, Jordi Torres BibTeX
Managing Performance of Aging Applications via Synchronized Replica Rejuvenation 18th IFIP/IEEE Distributed Systems: Operations and Management (DSOM 2007), Alexander Clemm, Lisandro Granville, Rolf Stadler (Eds.), Vol.4785, LNCS, 2007 Artur Andrzejak, Monika Moser, Luis Silva BibTeX
Medical Image Processing in MediGRID German E-Science Conference, 2007 Samatha Kottha, Kathrin Peter, Thomas Steinke, Julian Bart, Jürgen Falkner, Anette Weisbecker, Fred Viezens, Yassene Mohammed, Ulrich Sax, Andreas Hoheisel, Thilo Ernst, Dietmar Sommerfeld, Dagmar Krefting, Michael Vossberg BibTeX
Molecular Dynamics with FPGAs: A Portable API Molecular Simulations with Hardware Accelerators: A Portable Interface Definition for FPGA Supported Acceleration International Supercomputing Conference 2007 (ISC 2007), 2007 Eric Stahlberg, Michael Babst, Daryl Popig, Thomas Steinke BibTeX
Molecular Simulations with Hardware Accelerators Reconfigurable Systems Summer Institute 2007 (RSSI 2007), 2007 Eric Stahlberg, Daryl Popig, Debie Ryle, Michael Babst, Mohammed Anderson, Thomas Steinke BibTeX
Negotiation-based Choreography of Data-intensive Applications in the C3Grid Project German E-Science Conference, 2007 Christian Grimme, Tobias Langhammer, Alexander Papaspyrou, Florian Schintke BibTeX
P2P Routing of Range Queries in Skewed Multidimensional Data Sets ZIB-Report 07-23 Alexander Reinefeld, Florian Schintke, Thorsten Schütt PDF
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Paradigms for Scalable and Dependable Grids Future Generation Computer Systems (FGCS), 23(7), 2007 Artur Andrzejak, Alexander Reinefeld BibTeX
Providing Remote Access to Robotic Telescopes by Adopting Grid Technology German e-Science Conference, 2007 Thomas Granzer, Frank Breitling, Michael Braun, Harry Enke, Thomas Röblitz BibTeX
Stellaris: An RDF-based Information Service for AstroGrid-D German e-Science Conference, 2007 Mikael Högqvist, Thomas Röblitz, Alexander Reinefeld BibTeX
Transactions for Distributed Wikis on Structured Overlays DSOM, Alexander Clemm, Lisandro Granville, Rolf Stadler (Eds.), pp. 256-267, Vol.4785, LNCS, 2007 Stefan Plantikow, Alexander Reinefeld, Florian Schintke BibTeX
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Transaktionen für verteilte Wikis auf strukturierten Overlay Netzwerken Master's thesis, Humboldt-Universität zu Berlin, Alexander Reinefeld, Miroslaw Malek (Advisors), 2007 Stefan Plantikow PDF
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Transaktionen für verteilte Wikis auf strukturierten Overlay-Netzwerken ZIB-Report 07-43 Stefan Plantikow PDF
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Using Micro-Reboots to Improve Software Rejuvenation in Apache Tomcat Institute on System Architecture, CoreGRID, 2007 Paulo Silva, Luis Silva, Artur Andrzejak BibTeX
Using Virtualization to Improve Software Rejuvenation IEEE International Symposium on Network Computing and Applications (IEEE-NCA), 2007 Luis Silva, Javier Alonso, Paulo Silva, Jordi Torres, Artur Andrzejak BibTeX
Vorrichtung und Verfahren zum Abrufen / Speichern von elektronischen Daten in einem System mit mehreren Datenverarbeitungseinheiten Europäisches Patent EP 1 744 257 A1, 2007 Alexander Reinefeld, Florian Schintke, Thorsten Schütt BibTeX
Vorrichtung und Verfahren zum Speichern / Abrufen von Objekten mit mehrdimensional adressierten, elektronischen Daten Europäische Patentanmeldung Nr. 06012030.0 vom 12.06.2006, Patent Nr: 1868114, 2007 Alexander Reinefeld, Florian Schintke, Thorsten Schütt BibTeX
XtreemFS: a case for object-based storage in Grid data management 3rd VLDB Workshop on Data Management in Grids, co-located with VLDB 2007, 2007 Felix Hupfeld, Toni Cortes, Björn Kolbeck, Jan Stender, Erich Focht, Matthias Hess, Jesus Malo, Jonathan Marti, Eugenio Cesario BibTeX
2006
A DHT-based Peer-to-Peer Framework for Resource Discovery in Grids Institute on System Architecture, CoreGRID - Network of Excellence, 2006 Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist BibTeX
A Peer-to-Peer Framework for Resource Discovery in Large-Scale Grids CoreGRID Integration Workshop, 2006 Domenico Talia, Paolo Trunfio, Jingdi Zeng, Mikael Högqvist BibTeX
A computational approach to microRNA detection ZIB-Report 06-44 Patrick May, Markus Bauer, Christian Köberle, Gunnar Klau PDF
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Combining partial evaluation and staged interpretation in the implementation of domain-specific languages Sci. Comput. Program., 62(1), pp. 47-65, 2006 Christoph Herrmann, Tobias Langhammer BibTeX
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Connectivity independent protein-structure alignment: a hierarchical approach BMC Bioinformatics, Vol.7, p. 510, 2006 Björn Kolbeck, Patrick May, T. Schmidt-Goenner, Thomas Steinke, E. Knapp BibTeX
Defining Fuzzy Logic Controllers with Scarce Model Data First International Workshop on Feedback Control Implementation and Design in Computing Systems and Networks FeBID’06 (colocated with NOMS’06), 2006 Artur Andrzejak, Stefan Plantikow BibTeX
Deterministic Models of Software Aging and Optimal Rejuvenation Schedules Institute on System Architecture, CoreGRID, 2006 Artur Andrzejak, Luis Silva BibTeX
Experiences with High-Level Programming of FPGAs on Cray XD1 CUG Proceedings, 2006 Thomas Steinke, Alexander Reinefeld BibTeX
Flexible Definition of Data and Redundancy Layout for Storage Systems Sixth European Dependable Computing Conference (EDCC-6), Proceedings Supplemental Volume, pp. 59-60, 2006 Kathrin Peter, Peter Sobe BibTeX
Future Generation Grids: Proceedings of the Workshop on Future Generation Grids, November 1-5, 2004, Dagstuhl, Germany Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), Springer, 2006, ISBN: 978-0-387-27935-0 BibTeX
Implementation eines Resourcebrokers im Kontext eines Grid-Datenmanagement-Systems Master's thesis, 2006 Tom Lichtenstein PDF
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On Adaptability in Grid Systems Future Generation Grids: Proceedings of the Workshop on Future Generation Grids, November 1-5, 2004, Dagstuhl, Germany, Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), pp. 29-46, 2006 Artur Andrzejak, Alexander Reinefeld, Florian Schintke, Thorsten Schütt BibTeX
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On the Placement of Reservations into Job Schedules Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 198-210, Vol.4375, Lecture Notes in Computer Science, 2006 Thomas Röblitz, Krzysztof Rzadca BibTeX
Platzierung von Replikaten in Verteilten Systemen Master's thesis, 2006 Monika Moser PDF
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Predicting Machine Availabilities in Desktop Pools Management of Integrated End-to-End Communications and Services, 10th IEEE/IFIP Network Operations and Management Symposium, NOMS 2006, Vancouver, Canada, April 3-7, 2006. Proceedings, Joseph Hellerstein, Burkhard Stiller (Eds.), 2006 Artur Andrzejak, Patrício Domingues, Luís Silva BibTeX
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Predicting Resource Demand in Dynamic Utility Computing Environments 2006 International Conference on Autonomic and Autonomous Systems (ICAS 2006), 16-21 July 2006, Silicon Valley, California, USA, p. 6, 2006 Artur Andrzejak, Sven Graupner, Stefan Plantikow BibTeX
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Resource reservations with fuzzy requests Concurrency and Computation: Practice and Experience, 18(13), pp. 1681-1703, 2006 Thomas Röblitz, Florian Schintke, Alexander Reinefeld BibTeX
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Structured Overlay without Consistent Hashing: Empirical Results Sixth Workshop on Global and Peer-to-Peer Computing (GP2PC’06) at Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 16-19 May 2006, Singapore, 2006 Thorsten Schütt, Florian Schintke, Alexander Reinefeld BibTeX
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THESEUS - Protein Structure Prediction at ZIB ZIB-Report 06-24 Patrick May, Thomas Steinke PDF
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Using Checkpointing to Enhance Turnaround Time on Institutional Desktop Grids Second International Conference on e-Science and Grid Technologies (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands, p. 73, 2006 Patrício Domingues, Artur Andrzejak, Luís Silva BibTeX
Using distributed consistent branching for efficient reconciliation of mobile workspaces International Conference on Collaborative Computing, Vol.0, p. 8, 2006 Felix Hupfeld, M. Gordon BibTeX
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Vergleich von Co-Reservierungs-Algorithmen in Grid-Umgebungen Master's thesis, 2006 Jörg Meltzer PDF
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ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services Euro-Par 2006 Workshops, Wolfgang Lehner, Norbert Meyer, Achim Streit, Craig Stewart (Eds.), pp. 1148-1158, Vol.4375, Lecture Notes in Computer Science, 2006 Patrick May, Hans-Christian Ehrlich, Thomas Steinke BibTeX
2005
A capacity management service for resource pools Proceedings of the Fifth International Workshop on Software and Performance, WOSP 2005, Palma, Illes Balears, Spain, July 12-14, pp. 229-237, 2005 Jerry Rolia, Ludmila Cherkasova, Martin Arlitt, Artur Andrzejak BibTeX
Characterizing and Predicting Resource Demand by Periodicity Mining J. Network Syst. Manage., Special Issue on Self-Managing Systems and Networks, 13(2), 2005 Artur Andrzejak, Mehmet Ceyran BibTeX
Chord#: Structured Overlay Network for Non-Uniform Load-Distribution ZIB-Report 05-40 Thorsten Schütt, Florian Schintke, Alexander Reinefeld PDF
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Co-reservation with the concept of virtual resources 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 9-12 May, 2005, Cardiff, UK, pp. 398-406, 2005 Thomas Röblitz, Alexander Reinefeld BibTeX
Columba: an integrated database of proteins, structures, and annotations BMC Bioinformatics, Vol.6, pp. 81-92, 2005 Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser BibTeX
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Einbettung neuer Verwaltungsmethoden in die hierarchische Dateisystemsicht Master's thesis, 2005 The Anh Pham PDF
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Executing and observing CFD applications on the Grid Future Generation Computer Systems the International Journal of Grid Computing: Theory, Methods and Applications, 21(1), pp. 11-18, 2005 Jan Wendler, Florian Schintke BibTeX
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FEEDBACKFLOW – An Adaptive Workflow Generator for Systems Management Second International Conference on Autonomic Computing (ICAC 2005), 13-16 June 2005, Seattle, WA, USA, pp. 335-336, 2005 Artur Andrzejak, Ulf Hermann, Akhil Sahai BibTeX
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Implementierung einer NFS Schnittstelle im Kontext eines Grid-Datenmanagement-Systems Master's thesis, 2005 Jochen Witte PDF
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Protein structure alignment based on contact maps and secondary structure. Proceedings of the German Conference on Bioinformatics (GCB), pp. 122-123, 2005 Björn Kolbeck, T. Schmidt-Gönner, Patrick May, E. Knapp BibTeX
Self Management of Large-Scale Distributed Systems by Combining Peer-to-Peer Networks and Components Institute on System Architecture, CoreGRID - Network of Excellence, 2005 P. Roy, Ali Ghodsi, Seif Haridi, J. B. Stefani, T. Coupaye, Alexander Reinefeld, E. Winter, R. Yap BibTeX
THESEUS – a parallel threading core for highthroughput protein structure prediction Proceedings of the 7th Congress of the World Association of Theoretically Orientes Chemists (WARTOC), 2005 Patrick May, B. Kallies, Thomas Steinke BibTeX
The Grid Application Toolkit: Toward Generic and Easy Appliction Programming Interfaces for the Grid Procceedings of the IEEE, 93(3), pp. 534-550, 2005 Gabrielle Allen, K. Davis, Tom Goodale, Andrei Hutanu, Hartmut Kaiser, Thilo Kielmann, Andre Merzky, R. Nieuwpoort, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Edward Seidel, Brygg Ullmer BibTeX
DOI
The ZIB distributed data management system Future Generation Grids, Michel Cosnard, Vladimir Getov, Domenico Laforenza, Alexander Reinefeld (Eds.), p. 20, Dagstuhl Seminar Proceedings, 2005 Florian Schintke BibTeX
ZIB threading pipeline - A webservice-based, distributed structure prediction workflow. Proceedings of the German Conference on Bioinformatics (GCB), pp. 125-126, 2005 Patrick May, F. Krause, C. Ehrlich, J. Maaskola, Thomas Steinke BibTeX
2004
A distributed pipeline for structure prediction CASP6 Abstract Book, Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, Gaeta, Italy, pp. 112-114, 2004 E. Michalsky, A. Goede, Robert Preissner, Patrick May, Thomas Steinke BibTeX
Autonomic Management of Large Clusters and Their Integration into the Grid J. Grid Comput., 2(3), pp. 247-260, 2004 Thomas Röblitz, Florian Schintke, Alexander Reinefeld, Olof Bärring, Maite Barroso Lopez, German Cancio, Sylvain Chapeland, Karim Chouikh, Lionel Cons, Piotr Poznanski, Philippe Defert, Jan Iven, Thorsten Kleinwort, Bernd Panzer-Steindel, Jaroslaw Polok, Catherine Rafflin, Alan Silverman, Tim Smith, Jan van Eldik, David Front, Massimo Biasotto, Cristina Aiftimiei, Enrico Ferro, Gaetano Maron, Andrea Chierici, Luca dell’Agnello, Marco Serra, Michele Michelotto, Lord Hess, Volker Lindenstruth, Frank Pister, Timm Steinbeck, David Groep, Martijn Steenbakkers, Oscar Koeroo, Wim de Cerff, Gerben Venekamp, Paul Anderson, Tim Colles, Alexander Holt, Alastair Scobie, Michael George, Andrew Washbrook, Rafael Leiva BibTeX
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Building a Large and Efficient Hybrid Peer-to-Peer Internet Caching System IEEE Trans. Knowl. Data Eng., 16(6), pp. 754-769, 2004 Li Xiao, Xiaodong Zhang, Artur Andrzejak, Songqing Chen BibTeX
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Columba: Multidimensional Data Integration of Protein Annotations Data Integration in the Life Sciences, First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, Erhard Rahm (Ed.), pp. 156-171, Vol.2994, Lecture Notes in Computer Science, 2004 Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser BibTeX
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Dienste und Standards für das Grid Computing E-Science and Grid - Ad-hoc-Netze - Medienintegration, 18. DFN-Arbeitstagung über Kommunikationsnetze, Düsseldorf, 2004, Jan von Knop, Wilhelm Haverkamp, Eike Jessen (Eds.), pp. 293-304, Vol.P-55, LNI, 2004 Alexander Reinefeld, Florian Schintke BibTeX
Elastic Grid Reservations with User-Defined Optimization Policies Proceedings of the 2nd Workshop on Adaptive Grid Middleware (AGridM’04), in conjunction with PACT 2004, Antibes Juan-les-Pins, France, 2004 Thomas Röblitz, Florian Schintke, Jan Wendler BibTeX
Grid Services: Web Services zur Nutzung verteilter Ressourcen Informatik Spektrum, 27(2), pp. 129-135, 2004 Alexander Reinefeld, Florian Schintke BibTeX
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Grid-Enabled Computational Fluid Dynamics using FlowGrid Cracow Grid Workshop ’03 Proceedings, pp. 59-66, 2004 Jan Wendler, Florian Schintke BibTeX
Log-Structured Storage for Efficient Weakly-Connected Replication 24th International Conference on Distributed Computing Systems Workshops (ICDCS 2004 Workshops), 23-24 March 2004, Hachioji, Tokyo, Japan, pp. 458-463, 2004 Felix Hupfeld BibTeX
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Next Generation Grids 2 - Requirements and Options for European Grids Research 2005-2010 and Beyond NGG2 Group, 2004 Stefano Campadello, David De Roure, Bahador Farshchian, Meike Fehse, Carole A. Goble, Yunmiao Gui, Manuel V. Hermenegildo, Karl Jeffery, Domenico Laforenza, Peter Maccallum, Jordi Masso, Thierry Priol, Alexander Reinefeld, Michel Riguidel, David Snelling, Domenico Talia, Theodora A. Varvarigou BibTeX
PTGL - a web-based database application for protein topologies Bioinformatics, 20(17), pp. 3277-3279, 2004 Patrick May, Stefan Barthel, Ina Koch BibTeX
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Remote partial file access using compact pattern descriptions 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), April 19-22, 2004, Chicago, Illinois, USA, pp. 482-489, 2004 Thorsten Schütt, André Merzky, Andrei Hutanu, Florian Schintke BibTeX
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Scalable and Self-Optimizing Data Grids Annual Review of Scalable Computing, World Scientific, pp. 30-60, 2004 Alexander Reinefeld, Florian Schintke, Thorsten Schütt BibTeX
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Statistical service assurances for applications in utility Grid environments Performance Evaluation, 58(2-3), pp. 319-339, 2004 Jerry Rolia, Xiaoyun Zhu, Martin Arlitt, Artur Andrzejak BibTeX
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THESEUS: A Parallel Threading Core Procs. 12th Internat. Conf. on Intelligent Systems for Mol. Bio. (ISMB) and 3rd European Conf. on Comp. Bio. (ECCB), Glasgow, p. 199, 2004 Patrick May, Thomas Steinke, Michael Meyer BibTeX
2003
A Framework for Self-Optimizing Grids Using P2P Components 14th International Workshop on Database and Expert Systems Applications (DEXA’03), September 1-5, 2003, Prague, Czech Republic, pp. 689-693, 2003 Florian Schintke, Thorsten Schütt, Alexander Reinefeld BibTeX
DOI
Adaptive Control Overlay for Service Management First Workshop on the Design of Self-Managing Systems (AASMS’03), 2003 Sven Graupner, Artur Andrzejak, Vadim Kotov, Holger Trinks BibTeX
Automating Enterprise Application Placement in Resource Utilities Self-Managing Distributed Systems, 14th IFIP/IEEE International Workshop on Distributed Systems, Marcus Brunner, Alexander Keller (Eds.), pp. 118-129, Vol.2867, 2003 Jerry Rolia, Artur Andrzejak, Martin Arlitt BibTeX
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Columba - A Database of Annotations of Protein Structure ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 109-110, 2003 Kristian Rother, S. Trissl, H. Müller, Patrick May, R. Heek, Robert Preissner, Thomas Steinke, Ina Koch, Ulf Leser, Cornelius Frömmel BibTeX
Debugging Distributed Computations by Reverse Search The 21st IASTED International Multi-Conference on Applied Informatics (AI 2003), February 10-13, 2003, Innsbruck, Austria, M. Hamza (Ed.), pp. 719-725, 2003 Artur Andrzejak, Komei Fukuda BibTeX
Efficient Synchronization of Replicated Data in Distributed Systems Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part I, Peter Sloot, David Abramson, Alexander Bogdanov, Jack Dongarra, Albert Zomaya, Yuri Gorbachev (Eds.), pp. 274-283, Vol.2657, Lecture Notes in Computer Science, 2003 Thorsten Schütt, Florian Schintke, Alexander Reinefeld BibTeX
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From Clusters to the Fabric: The Job Management Perspective 2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 1-4 December 2003, Kowloon, Hong Kong, China, pp. 468-473, 2003 Thomas Röblitz, Florian Schintke, Alexander Reinefeld BibTeX
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Grid Computing in Deutschland Spektrum der Wissenschaft, pp. 72-73, 2003 Alexander Reinefeld, Florian Schintke BibTeX
How Does a Protein Work? BioTOPics J. of Biotechnology Berlin-Brandenburg, 18(2), pp. 4-5, 2003 Frank Cordes, Robert Preissner, Thomas Steinke BibTeX
In between k-Sets, j-Facets, and i-Faces: (i , j) - Partition Discrete & Computational Geometry, 29(1), pp. 105-131, 2003 Artur Andrzejak, Emo Welzl BibTeX
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Lastbalancierung in Peer-to-Peer Systemen Master's thesis, 2003 Simon Rieche PDF
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Memory-Efficient and Fast Enumeration of Global States Seventh International Conference on Information Visualization, IV 2003, 16-18 July 2003, London, UK, Ebad Banissi, Katy Börner, Chaomei Chen, Gordon Clapworthy, Carsten Maple, Amy Lobben, Christopher Moore, Jonathan Roberts, Anna Ursyn, Jian-Ping Zhang (Eds.), pp. 189-193, 2003 Artur Andrzejak BibTeX
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Modeling Replica Availability in Large Data Grids J. Grid Computing, 1(2), pp. 219-227, 2003 Florian Schintke, Alexander Reinefeld BibTeX
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PTGL - Protein Topology Graph Library ECCB - Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics, C. Christophe, H.-P. Lenhof, M.-F. Sagot (Eds.), pp. 193-194, 2003 Patrick May, Ina Koch BibTeX
Recognizing and Predicting Agent Behavior with Case Based Reasoning RoboCup 2003: Robot Soccer World Cup VII, Daniel Polani, Brett Browning, Andrea Bonarini, Kazuo Yoshida (Eds.), pp. 729-738, Vol.3020, Lecture Notes in Computer Science, 2003 Jan Wendler, Joscha Bach BibTeX
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Service-Centric Globally Distributed Computing IEEE Internet Computing, 7(4), pp. 36-43, 2003 Sven Graupner, Vadim Kotov, Artur Andrzejak, Holger Trinks BibTeX
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Towards automation of computing fabrics using tools from the fabric management workpackage of the EU DataGrid project Computing in High Energy and Nuclear Physics (CHEP03), pp. 1-8, 2003 Olof Bärring, Maite Barroso Lopez, German Cancio, Thomas Röblitz, Florian Schintke, et al. BibTeX
arXiv
Visualizing Topology in Self-Organizing Management Overlays Seventh International Conference on Information Visualization, IV 2003, 16-18 July 2003, London, UK, Ebad Banissi, Katy Börner, Chaomei Chen, Gordon Clapworthy, Carsten Maple, Amy Lobben, Christopher Moore, Jonathan Roberts, Anna Ursyn, Jian-Ping Zhang (Eds.), pp. 200-205, 2003 Sven Graupner, Artur Andrzejak, Vadim Kotov BibTeX
DOI
2002
2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 22-24 May 2002, Berlin, Germany H. Bal, K.-P. Löhr, Alexander Reinefeld (Eds.), 2002, ISBN: 0-7695-1582-7 BibTeX
Concepts and Technologies for a Worldwide Grid Infrastructure Euro-Par 2002, Parallel Processing, 8th International Euro-Par Conference Paderborn, Germany, August 27-30, 2002, Proceedings, Burkhard Monien, Rainer Feldmann (Eds.), pp. 62-72, Vol.2400, Lecture Notes in Computer Science, 2002 Alexander Reinefeld, Florian Schintke BibTeX
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GuiGen: a toolset for creating customized interfaces for Grid user communities Future Generation Comp. Syst., 18(8), pp. 1075-1084, 2002 (preprint available as ZIB-Report 02-06) Alexander Reinefeld, Hinnerk Stüben, Florian Schintke, George Din PDF (ZIB-Report)
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Hierarchical Structures in Attribute-based Namespaces and their Application to Browsing ZIB-Report 03-06 Felix Hupfeld PDF
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On the Cost of Reliability in Large Data Grids ZIB-Report 02-52 (Appeared under the title "Modeling Replica Availabilty in Large Data Grids" in: Journal of Grid Computing 1 (2003) pp. 219-227) Florian Schintke, Alexander Reinefeld PDF
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Performance Evaluation, Analysis and Optimization Euro-Par 2002 Parallel Processing, pp. 131-131, Vol.2400, LNCS, 2002 Barton P. Miller, Jesús Labarta, Florian Schintke, Jens Simon BibTeX
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Statistical Service Assurances for Applications in Utility Grid Environments 10th International Workshop on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS 2002), 11-16 October 2002, Fort Worth, Texas, USA, pp. 247-256, 2002 Jerry Rolia, Xiaoyun Zhu, Martin Arlitt, Artur Andrzejak BibTeX
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Synchronisation von verteilten Verzeichnisstrukturen Master's thesis, 2002 Thorsten Schütt PDF
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Teleimmersion – Erfahrungen mit der Gigabit-Ethernet-Strecke zwischen Berlin und Hannover DFN-Mitteilungen, Vol.58(3), pp. 7-9, 2002 Hubert Busch, Sebastian Heidl, Ralf Staudemeyer, Manfred Stolle BibTeX
2001
A Cache Simulator for Shared Memory Systems Computational Science - ICCS 2001, pp. 569-578, Vol.2074, LNCS, 2001 Florian Schintke, Jens Simon, Alexander Reinefeld BibTeX
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Early experiences with the EGrid testbed Proceedings First IEEE/ACM International Symposium on Cluster Computing and the Grid, pp. 130-137, 2001 Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell BibTeX
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2000
Ermittlung von Programmlaufzeiten anhand von Speicherzugriffen, Microbenchmarks und Simulation von Speicherhierarchien Master's thesis, 2000 Florian Schintke PDF
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